Electronic Theses and Dissertations (Masters)

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    Detecting Disease in Citrus Trees using Multispectral UAV Data and Deep Learning Algorithm
    (University of the Witwatersrand, Johannesburg, 2024-06) Woolfson, Logan Stefan; Adam, Elhadi
    There is a high prevalence, in South Africa, of fruit tree related diseases infesting lemon trees, subsequently affecting overall crop yield and quality. Ultimately, the income for the farmers is significantly diminished and limits the supply of nutritional food crops for the South African population, who already suffer from a high incidence of malnutrition. Currently, there are various methods utilized to detect diseases in fruit trees, however they pose limitations in terms of efficiency and accuracy. By employing the use of drones and machine learning methods, fruit tree diseases could be detected at an earlier stage of development and with a much higher level of accuracy. Consequently, the chances of remedying the trees before the disease spreads is greatly improved, and the supply of nutritious fruit within South Africa is increased. This research report’s aim is to investigate the effectiveness of a deep learning algorithm for detecting and classifying diseases in lemon orchards using multispectral drone imagery. This entails assessing the performance of a pretrained ResNet-101 model, fine-tuned with additional sample images, in accurately identifying and classifying diseased lemon trees, specifically those affected by Phytophthora root rot. The methodology involves the utilization of a pretrained ResNet-101 model, a deep learning architecture, and the retraining of its layers with an augmented dataset from multispectral aerial drone images of a lemon orchard. The model is fine-tuned to enhance its ability to discern subtle spectral variations indicative of disease presence. The selection of ResNet-101 is grounded in its proven success in image recognition tasks and transfer learning capabilities. The results obtained demonstrated an impressive accuracy of 80%. The deep learning algorithm exhibited notable performance in distinguishing root rot-affected lemon trees from their healthy counterparts. The findings indicate the promise of utilizing advanced deep learning methods for timely and effective disease detection in agricultural farmlands, facilitating orchard management.
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    Study of the influence of gust fronts and topographical features in the development of severe thunderstorms across South Africa
    (University of the Witwatersrand, Johannesburg, 2024) Mofokeng, Puseletso Samuel; Engelbrecht, Francois A.; Bopape, Mary-Jane M.; Grab, Stefan W.
    South Africa experiences a variety of severe thunderstorms which occasionally leads to a large quantity of small-sized or large-sized hailstones, heavy rain and flash flooding, strong damaging straight-line winds, and/or even tornadoes. For the base period, June 2016 to June 2021, a significant percentage of these severe storms was triggered by topographic features. The Unified Model (UM) at 4 km horizontal grid resolution was used and found to be unable to predict topography-generated vertical wind shear and the associated severe thunderstorms. This inability of the model necessitated the development of a conceptual model by relating the rapid cooling of the cloud-top temperatures with high resolution topographic maps. This means, satellite images were used to deduce the connection of atmospheric fluids (gust fronts) with near linear, concave and/or downslope topographical features. Severe thunderstorms included those connected to the large amounts of vorticity advection (e.g. 500 hPa level), development of low-level mesoscale circulations within the synoptic settings and the resultant vertical wind shear in the lower tropospheric levels. Large amounts of negative vorticity advection are typical with strong horizontal shear and curvature; they are often correlated with trough axes that lean from the south-west to north-east. The usage of large amounts of negative vorticity advection transcends to whether discrete severe thunderstorms will be characterised by heavy rain and flash-flooding or hail with damaging winds. Moreover, the interaction of topography with gust fronts of the upwind thunderstorms linked with large amounts of negative vorticity advection is also investigated. The impacts of storms studied in this dissertation posed a major threat to property, livelihood, agriculture, human and animal lives or even immediate to residual economic loss. This research is aimed at improving the service level for the benefit of disaster management agencies and the public at large. An in-depth study of microscale events such as tornadoes and landspouts was also conducted to improve lead-time for their nowcasting.
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    Assessing the effectiveness of wetlands in the Krugersdorp Game Reserve in attenuating pollution from mines on the West Rand, South Africa
    (University of the Witwatersrand, Johannesburg, 2023) Sawuka, Noluthando Thulisile; Evans, Mary; Masindi Khuliso
    In South Africa, 48% of the country’s wetlands are critically endangered because of anthropogenic activities. Wetlands are an important part of the landscape and play a critical role including but not limited to improving water quality, habitat provision, and water storage. This research aimed to assess the effectiveness of wetland systemsin attenuating pollution from water discharged from abandoned gold mines in the Krugersdorp Game Reserve (KGR), West Rand. Eight (8) water samples were collected in the study site. Physico-chemical parameters were measured in situ, and chemical parameters were measured in the lab. The measured physico–chemical parameters from the majority of the sampled wetlands exceeded at least one of the stipulated water quality legislations, which included the General Authorization Limit Section 21f and h, 2013; Unit for TWQGR; Mine Health and Safety Act; and WUL wastewater in terms of the recorded pH, total dissolved solids, and salinity variables. Overall, a decreasing trend in pH level was observed from wetlands sampled upstream of the KGR to wetlands sampled downstream of the KGR, with the highest recorded pH level (Alkalinity: 8.9) obtained from the sampled wetland that was closest to the adjacent mining site upstream of theKGR whilst the lowest recorded pH level (Acidity: 3.9) obtained from a wetland sampling point that was further from the adjoining mine and downstream in the KGR. A weak and positive correlation (r=0.040) was obtained between the measured total dissolved solids and pH levels from the sampled wetlands, indicating minimal spatial variability. However, a strong positive correlation (r=0.999, Correlation is significant at the 0.01 level) was obtained between the measured total dissolved solids and salinity from the sampled wetlands. At least one of the limits stipulated by the water quality legislation was exceeded in terms of the analysed inorganic constituents from the sampled wetlands. The dominant ions recorded in the wetlands in increasing order are F, K, Cl, Mg, Na, Ca, and SO4. Mn and Si were the dominant metal concentrations recorded in most wetlands, with the former also showing exceedances when compared to the stipulated water quality guidelines. The recorded data from the measured physico–chemical parameters and analysed chemical variables indicated poor water quality in wetlands sampled downstream of the KGR and upstream of the KGR. Stringent measures in water quality monitoring need to be implemented to mitigate the environmental impacts associated with wastewater discharge into the receiving environment.
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    Estimating rooftop solar energy potential using spatial radiation models and thermal remote sensing: The case of Witwatersrand University
    (University of the Witwatersrand, Johannesburg, 2023) Ndemera, Rudo Hilda; Adem, Ali K.; Adam, Elhadi
    The main purpose of this research was to estimate the University of Witwatersrand building’s rooftop solar energy potential using the GIS-based solar Area Solar Radiation (ASR) analyst upward hemispherical view shed algorithm. The two major datasets used in this research for rooftop solar energy potential modelling are building footprint data and the Digital Surface Model. Building footprint data, specifically rooftop area was extracted using machine learning CNTK unified toolkit and deep neural networks. The data was presented as individual polygon shape files for each building. The high-resolution Digital Surface Model imagery was sourced from the Advanced Land Observation Satellite. Pre-processing of the imagery was done for atmospheric correction. The DSM was then used in the Area Solar Radiation model to create an upward view shed for every point on the study area which is essential for computing solar radiation maps. The efficiency of using this algorithm is that it considers the shading effects caused by surrounding topography and surrounding man-made features, alterations in the azimuth angle and the position of the sun. Apart from the incoming solar radiation reaching the rooftops, the elevation and orientation of the rooftop cells limit the solar panel tilt angle and intensity of the incoming solar radiation, respectively. These factors were used in setting the suitability criteria together with solar radiation for the identification of suitable rooftop cells in this research. The relationship between land surface temperature and solar radiation values was assessed to determine if it can be used as an indicator for solar panel efficiency. Results from this research indicate that the University of Witwatersrand receives high levels of incoming solar radiation and has a high solar energy rooftop generation capacity that can meet the energy demand on campus. To improve accuracy of the research results, a drone could have been used to measure insolation across the study area to improve the spatial resolution. However, this was not possible due to various restrictions.
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    Mapping and monitoring land transformation of Boane district, Mozambique (1980 – 2020), using remote sensing
    (University of the Witwatersrand, Johannesburg, 2023) Dengo, Claudio Antonio; Atif, Iqra; Adam, Elhadi
    Although natural and environmental factors play a significant role in land transformation, human actions dominate. Therefore, to better understand the present land uses and predict the future, accurate information describing the nature and extent of changes over time is necessary and critical, especially for developing countries. It is estimated that these countries will account for 50% of the world's population growth in the next few years. Hence, this research was an attempt to assess and monitor land cover changes in Boane, Mozambique, over the past 40 years and predict what to expect in the next 30 years. This district has been challenged by a fast-growing population and land use dynamic, with quantitative information, driving forces and impacts remaining unknown. Through a supervised process in a cloud base Google Earth Engine platform, a set of five Landsat images at ten-year intervals were classified using a random forest algorithm. Seven land classes, i.e., agriculture, forest, built-up, barren, rock, wetland and water bodies, were extracted and compared through a pixel-by-pixel process as one of the most precise and accurate methods in remote sensing and geographic information system applications. The results indicate an active alternate between all land classes, with significant changes observed within agriculture, forest and build-up classes. As it is, while agriculture (-26.1%) and forest (-21.4%) showed a continuously decreasing pattern, build-up class (45.8%) increased tremendously. Consequently, over 69% of the forest area and 59% of the agricultural area shifted into build-up, i.e., was degraded or destroyed. Similarly, the conversion of barren land area (57.2%) and rock area (47.3%) into build-up indicates that those areas were cleaned. The overall classification accuracy averaged 90% and a kappa coefficient of 0.8779 were obtained. The CA-Markov model, used to assess future land uses, indicates that build-up will continue to increase significantly, covering 60% of the total area. From this finding, the land cover situation in the next 30 years will be critical if no action is taken to stop this uncontrolled urban sprawl. An adequate land use plan must be drawn, clearly indicating the locations for different activities and actions for implementation.
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    Evaluating the spatiotemporal changes of urban wetlands in Klip River wetland, South Africa
    (University of the Witwatersrand, Johannesburg, 2023-09) Nxumalo, Nolwazi; Knight, Jasper; Adam, Elhadi
    This study assesses the impacts of land use / land cover (LULC) change in an urban wetland over the past 30 years utilizing machine learning and satellite-based techniques. This study looked at LULC distributions in the Klip River wetland in Gauteng, South Africa. The aims and methods used in this study were: (1) to conduct a comprehensive analysis to map and evaluate the effects of LULC changes in the Klip River wetland spanning from 1990 to 2020, employing Landsat datasets at intervals of 10 years, and to quantify both spatial and temporal alterations in urban wetland area. (2) To predict the change in urban wetland area due to specific LULC changes for 2030 and 2040 using the MOLUSCE plugin in QGIS. This model is based on observed LULC including bare soil, built-up area, water, wetland, and other vegetation in the quaternary catchment C22A of the Klip River wetland, using multispectral satellite images obtained from Landsat 5 (1990), Landsat 7 (2000 and 2010) and Landsat 8 OLI (2020). (3) For the results of this study, thematic maps were classified using the Random Forest algorithm in Google Earth Engine. Change maps were produced using QGIS to determine the spatiotemporal changes within the study area. To simulate future LULC for 2030 and 2040, the MOLUSCE plugin in QGIS v2.8.18 was used. The overall accuracies achieved for the classified maps for 1990, 2000, 2010, and 2020 were 85.19%, 89.80%, 84.09%, and 88.12%, respectively. The results indicated a significant decrease in wetland area from 14.82% (6949.39 ha) in 1990 to 5.54% (2759.2 ha) in 2020. The major causes of these changes were the build-up area, which increased from 0.17% (80.36 ha) in 1990 to 45.96% (22 901 ha) in 2020—the projected years 2030 and 2040 achieved a kappa value of 0.71 and 0.61, respectively. The results indicate that built-up areas continue to increase annually, while wetlands will decrease. These LULC transformations posed a severe threat to the wetlands. Hence, proper management of wetland ecosystems is required, and if not implemented soon, the wetland ecosystem will be lost.
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    Examining the remaining Rock Art at Linton, Eastern Cape, and its relationship with the Linton Panel at the Iziko South African Museum in Cape Town
    (University of the Witwatersrand, Johannesburg, 2023) Oster, Sandee Michelle; Pearce, David
    The Linton panel has been the subject of great awe for many decades. It has been displayed in various exhibits worldwide and the subject of multiple research publications. However, its history and origin are not nearly as well understood as once believed, as a large part of its past has been omitted or forgotten. In this dissertation the images of not only the Linton panel are discussed, but those that remain in the shelter from whence it came are brought out of obscurity. How the panel came to be where it is today and the images’ relationship with the shelter and the remaining paintings are examined. Lastly, a forgotten piece of the shelter, a second panel, will be examined in greater detail than ever before: how it fell into relative obscurity and what its images tell us about the Linton shelter and its artists’ beliefs and purposes.
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    A Geospatial Approach to Mapping Jacaranda Tree Distribution in Johannesburg, South Africa
    (University of the Witwatersrand, Johannesburg, 2023-11) Reddy, Rohini Chelsea; Fitchett, Jennifer
    Accurate mapping of the spatial distribution of invasive species is vital for the implementation of effective monitoring and management strategies. In countries where resources are scarce and costly, citizen science provides a cost-effective and accurate alternative for large-scale data collection. Citizen’s familiarity with their environment contributes to aspects such as accurate identification of features on the landscape. Advances in a geographic information system (GIS) together with open-sourced photography from Google Street View, provide accurate methods for in-field and remote validation of citizen science data for invasive mapping and assists with the creation and compilation of maps to visualize the spatial distribution of invasive plants upon the landscape. In this study, the first spatial distribution maps for invasive tree species, Jacaranda mimosofolia (common name: Jacaranda), are created for the City of Johannesburg (CoJ). Jacaranda trees are well-known by citizens in the CoJ for their district purple flowers which blanket the landscape during springtime. A combination approach using citizen science, GIS, and Google Street View for data collection, analysis, and creation of the first spatial distribution map of exact location and prevalence of Jacaranda trees within certain suburbs of the CoJ, is produced. A total of 8,931 ground-truthing geopoints together with extensive Google Street View validation for Jacaranda tree presence, formed the basis of accurate spatial distribution maps. The first research question of this study focused on the spatial distribution of Jacaranda trees in the CoJ and was answered as a total of 54 suburbs were confirmed as having a large presence of Jacaranda trees in the CoJ. Citizen science data collected a total of 488 geotags for possible Jacaranda tree presence in the CoJ, over a 75-day online survey collection period. Although citizen science data provided a lower spatial resolution compared to successful fieldwork and Google Street View approaches, citizen science data provided very high accuracy for the identification and geolocation of Jacaranda tree presence in the CoJ which answers the second research question based on the effectiveness of the geospatial approach towards citizen science, ground-truthing and Google Street View as data collection methods. Since the accuracy of citizen science resulted in 66% of collected geotags within the categories of ‘very high’, ‘high’ and ‘moderate’ accuracy ranges of between <7-24m from a confirmed Jacaranda tree, together with the accuracy of 8,931 in-field collected geolocation of Jacaranda trees and Google Street View’s accuracy and capability of collecting street view imagery – it is concluded that the combined approach of ground-truthing, citizen science and Google Street View contribute not only to effective data collection, but also towards the successful mapping of Jacaranda tree presence in the CoJ.
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    Lessons for South Africa’s proposed social security retirement reforms from the experience of other sub-Saharan African countries
    (University of the Witwatersrand, Johannesburg, 2024) Walker, Stephen
    The South African government intends reforming its current social security system, including retirement benefits. Views on how this should be done vary, even within government. Proposals often take the experience of other countries into consideration but there is limited literature on the experience of other sub-Saharan African countries. The region is experiencing demographic change, especially reduced infant mortality, reduced fertility and increasing old age longevity. Here South Africa is advanced relative to other countries in the region, despite the high unemployment levels. South Africa’s informal sector is large relative to developed countries, but smaller than elsewhere in Sub-Saharan Africa. Countries in the region have tried several approaches when introducing reform. Level A non- contributory pensions in South Africa are advanced, relative to most countries in the region. Most other countries have mandatory, contributory, government-run level B funds, the closest equivalent in South Africa is the Unemployment Insurance Fund. DB level B schemes are the norm. However, many countries are experiencing strain on the financial sustainability of these schemes and a number of countries have had to increase scheme contributions or reduce benefits. Occupational retirement funds in South Africa are well established and have experienced significant reforms recently. South Africa’s level C2 occupational retirement fund coverage is not mandated by government but is high relative to other countries in the region, even those with compulsory coverage under level C1. South Africa is still relatively new to introducing contributory pensions for informal sector workers. Other countries have tried various approaches under both levels D1 and D2 without finding a perfect solution. The research shows that maximising coverage requires all pension types. Pension reform is an iterative process, there is no perfect solution and phasing-in change is best. Government should make decisions on what incremental improvements can be made and start implementing these. The sequencing of reforms is important, what happens at each level of pension provision will influence what can and should be done at the next level. South Africa should move towards universalisation of non-contributory pensions but needs to do so in a cost-effective manner. The experience in other countries in the region should be considered when setting goals for coverage of informal sector workers by a level D1 or D2 contributory scheme. Compulsory contributory pensions should be introduced for formal sector workers, shifting from a level C2 to a level C1 approach. Expanding the Unemployment Insurance Fund to cater for retirement benefits as opposed to creating a new level B national fund should be explored.
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    Assessment of disposal methods of construction and demolition waste: A case study of south-eastern industrial and residential areas in Johannesburg, South Africa
    (University of the Witwatersrand, Johannesburg, 2024) Jager, Vasti de; Kubanza, Nzalalemba Serge
    In a world where all strive for further development, construction and demolition play alarge role in that process. The waste generated in construction and demolition projects is of great magnitude and needs to be dealt with and disposed of appropriately, however, is this truly the case? Gauteng is a province where landfills are easily accessible and a cheap disposal option. This study set out to assess disposal methods of construction and demolition waste in south-east Johannesburg, South Africa. Landfills and recycling were the prevalent disposal methods, and these were compared to other countries’ disposal methods. Policy and legislation regarding solid waste management were analysed and a gap between written documents and implementation was identified. The question of sustainability also played a role in the synthesis of the study