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- This community is for all faculties and schools' research outputs and publications by Wits academics and researchers.
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- This Community hosts a collection of electronic theses and dissertations (ETDs) submitted by doctoral and masters' students of Wits University.
- This community is for all faculties and schools' theses and dissertations by masters and doctoral students.
Recent Submissions
South African Podocarpaceae distribution interpreted from a physiological and population genetics perspective
(University of the Witwatersrand, Johannesburg, 2023-09) Twala, Thando Caroline; Fisher, Jolene T.; Glennon, Kelsey L.
Podocarpaceae (podocarp) are the most diverse conifer family with a Southern Hemisphere distribution. Podocarps occur in Afrotemperate and Afromontane forests at high elevations that are cool and humid. Podocarps once dominated the forest canopy but due to their slower growth rate and photosynthetic rates they have are in competition withangiosperms which have faster growing and higher photosynthetic rate. Due to the competition between podocarps and angiosperms, Bond (1989) proposed that podocarps were excluded to nutrient poor and unfavourable environments due to their limited competitive ability. However, podocarps persist under the forest canopy until conditions become favourable. This power dynamic shifts with climate oscillations where podocarps distributions expand and dominate when conditions become cooler. Owing to podocarps being the most diverse and widespread conifers they make for a good study system. This thesis focuses on understanding the climatic variables driving the current and future distribution of podocarps, how their seedling physiology may influence their ability to recruit and establish under climate change, and how this can influence their ability to disperse in their South African distribution. Ensemble species distribution modelling was used to characterise the current and future distribution of podocarps and identify the climatic variables that influence their distribution. The current and future environmental niche was quantified using environmental niche modelling. I found that variables predicting rainfall seasonality were the most important at determining the distribution of podocarps in South Africa. Afrocarpus falcatus and P. latifolius were predicted to have the largest geographic distribution, with P. henkelii and P. elongatus having restricted distributions. Both A. falcatus and P. latifolius were predicted to occur in the Limpopo, Mpumalanga, KwaZulu-Natal, Eastern Cape and Western Cape provinces of South Africa. Podocarpus henkelii was predicted to occur in the KwaZulu-Natal and Eastern Cape provinces. Podocarpus elongatus is endemic to the Western Cape Province. All four podocarps were predicted to expand to higher altitudes (up the escarpment) under climate change and contract in its coastal distribution. Although P. elongatus was predicted to occupy the smallest geographic distribution it was predicted to have the widest environmental niche than the other species, which was predicted to contract under climate change. The environmental niche of P. latifolius and P. henkelii was predicted to remain stable. Afrocarpus falcatus, P. latifolius, and P. henkelii showed niche conservatism, however, P. elongatus under RCP 4.5 → current and the RCP 8.5↔ current niche comparisons showed niche divergence. Podocarpus elongatus was predicted to expand to an environment it currently does not occupy. Ecophysiological and morphological experiments were conducted to understand how podocarp seedlings respond to drought and elevated temperatures. The experiments indicated that P. henkelii seedlings were more drought and heat tolerant than A. falcatus seedlings. Conditions are predicted to become hotter and drier in some parts of South Africa, and this study has shown that P. henkelii seedlings will be able to tolerate these conditions better than A. falcatus seedlings. Furthermore, this suggests that the distribution of P. henkelii is not constrained by its physiology but rather by other mechanisms such as competition, reproductive biology, and/or shade tolerance. Microsatellites were used to inform us about possible podocarp dispersal patterns in A. falcatus, P. latifolius and P. henkelii in South Africa. The results suggested that podocarp populations in South Africa were shown to have higher genetic diversity than other podocarps globally, however these results may be due to the limited number of microsatellites used in this study, smaller population sizes in comparison to other studies and methods used to measure population structure and diversity. As expected, the geographically widespread species (A. falcatus and P. latifolius) are more diverse than the geographically restricted P. henkelii. Geographically distant A. falcatus and P. henkelii populations showed higher differentiation than geographically proximal populations. In P. latifolius South African populations, there was strong isolation by distance. Although the distribution of podocarps is disjunct, there is dispersal between populations. Podocarps are resilient to climate change as was demonstrated by the work in this thesis, and by their paleodistribution expanding and contracting with climate oscillations. In this thesis I considered climate, ecophysiology and genetics as determinants of podocarps distribution. Under climate change, podocarps are predicted to expand to higher elevations to track favourable climatic conditions. Seasonal drought is the most important climatic determinant of podocarp distribution. The ability of these species to tolerate drought and heat stress suggests that the seedlings might be able to tolerate short periods of drought and heat stress, however prolonged exposure may lead to seedling mortality, but populations will then be maintained by adults. Populations show evidence of gene flow, indicating they will be able to persist through changing climates, as they have done in the past. This thesis has highlighted that the factors constraining podocarp distributions might be demographic, and future works should investigate the role of fire in podocarp seedling establishment and longevity, as well as their interactions with angiosperm competitors.
Synthesis of carbon nanodots-peptide conjugates decorated with germanium for bioimaging
(University of the Witwatersrand, Johannesburg, 2023-10) Machumele, Khanani Peggy; Makatini, Maya Mellisa; Maubane-Nkadimkeng, Manoko
The World Health Organization Global Cancer Observatory estimates that cancer caused 9.96 million deaths worldwide in 2020, making early detection crucial for diagnosis and treatment. Accurate identification of cancer plays a crucial role in the diagnosis and treatment process. It allows for customized and efficient therapies, minimizes unnecessary procedures and adverse effects, and improves the prognostic insights for patients and healthcare providers alike. The challenges in diagnosis include overdiagnosis, false positives/negative outcomes, and limited sensitivity. Advanced technologies are needed for better imaging accuracy and minimizing harm. This study aims to fabricate carbon dot-peptide conjugates to enhance bio-imaging capacity and selectivity. The peptides used are derived from the GKPILFF cell-penetrating peptide sequence and the RLRLRIGRR peptide, which is selective to cancerous cells. The Carbon dots were used to provide the photoluminescent properties required for bio-imaging of cancerous cells. Carbon dots (CDs) were synthesized using iso-ascorbic acid as the source of carbon using a microwave-assisted method. The nitrogen and germanium-modified carbon dots (Iso-N-Ge-CDs) demonstrated the highest photoluminescent properties compared to the unmodified CDs (Iso-CDs) and those with either N (Iso-N-CDs) or Ge (Iso-Ge-CDs). Photoluminescence emissions of longer wavelengths suitable for cell imaging were observed for the CDs, and the Iso-N-Ge-CDs demonstrated excitation-dependent emission wavelength behavior, pH sensitivity, and Fe3+ sensitivity. The 13 peptides derived from the peptide accelerating sequence GKPILFF and the cancer-selective peptide RLRLRIGRR were successfully synthesized. The peptides were characterized using Liquid Chromatography Mass Spectrometry (LCMS) and purified using preparative High-Pressure Liquid Chromatography (prep-HPLC). The secondary structure of the L-GKPILFF penetration acceleration peptide sequence (Pas) adopted a helical secondary structure. The D-GKPILFF derivative was found to adopt a random coil structure. These were confirmed using Nuclear Magnetic Resonance (NMR) techniques such as Total Correlation Spectroscopy (TOCSY) and Rotating Frame Overhauser Enhancement Spectroscopy (ROESY) NMR. The CDs-peptide conjugates were successfully synthesized, and the confirmation of conjugation involved multiple methods, including UV-Vis and PL techniques. To the best of our knowledge, the thesis incorporates the first study to demonstrate long-range interactions through ROESY NMR. The NMR analysis indicated that the helical structure of the peptide could be affected after conjugation, leading to notable peak shifts. Since the helical structure is crucial for the peptide's bioactivity and stability enhancement, NMR spectra with fewer structural changes in the peptide region may improve its biological properties. The research contained valuable information for scientists aiming to design and characterize Carbon dot-peptide conjugates with enhanced permeability and selectivity that can effectively deliver materials into cytosolic space.
Two-dimensional turbulent classical and momentumless thermal wakes
(University of the Witwatersrand, Johannesburg, 2023-07) Mubai, Erick; Mason, David Paul
The two-dimensional classical turbulent thermal wake and the two-dimensional momentumless turbulent thermal wake are studied. The governing partial differential equations result from Reynolds averaging the Navier-Stokes, the continuity and energy balance equations. The averaged Navier-Stokes and energy balance equations are closed using the Boussinesq hypothesis and an analogy of Fourier’s law of heat conduction. They are further simplified using the boundary layer approximation. This leads to one momentum equation with the continuity equation for an incompressible fluid and one thermal energy equation. The partial differential equations are written in terms of a stream function for the mean velocity deficit that identically satisfies the continuity equation and the mean temperature difference which vanishes on the boundary of the wake. The mixing length model and a model that
assumes that the eddy viscosity and eddy thermal conductivity depend on spatial variables only are analysed. We extend the von Kármán similarity hypothesis to thermal wakes and derive a new thermal mixing length. It is shown that the kinematic viscosity and thermal conductivity play an important role in the mathematical analysis of turbulent thermal wakes. We obtain and use conservation laws and associated Lie point symmetries to reduce the governing partial differential equations to ordinary differential equations. As a result we find new analytical solutions for the two-dimensional turbulent thermal classical wake and momentumless wake. When the ordinary differential equations cannot be solved analytically we use a numerical shooting method that uses the two conserved quantities as the targets.
Determinants of sub-optimal glycaemic control among patients enrolled in a medicine dispensing programme in Kwazulu-Natal: A cohort study, 2018 – 2021
(University of the Witwatersrand, Johannesburg, 2023) Johnston, Leigh Clare
Background: In South Africa, type 2 diabetes mellitus (T2DM) is a growing public health problem, thus, by 2030, 50% of T2DM patients, receiving treatment, must achieve optimal glycaemic control (haemoglobin A1c (HbA1c) ≤7%). The CCMDD (Central Chronic Medicines Dispensing and Distribution) programme allows glycaemically-stable patients to collect their medication from community-based pick-up points. While the CCMDD is a large public health programme, there is a paucity in stakeholder’s knowledge of T2DM patients glycaemic control over time. We determined glycaemic control for CCMDD-enrolled T2DM patients in eThekwini, South Africa from 2018-2021, as well as the rate and predictors of becoming sub-optimally controlled.
Methods: We performed a cohort study, linking HbA1c data from the National Health Laboratory Service to CCMDD-enrolled patients in eThekwini, South Africa from 2018–2021. We included patients optimally controlled at their baseline HbA1c, and having ≥1 repeat test available. We used Kaplan Meier analysis to assess survival rates and Cox regression to determine associations between time to sub-optimal control (HbA1c > 7%) and several factors. Adjusted hazard ratios (aHR), 95% confidence interval (95% CI), and p-values are reported.
Results: Of 41145 T2DM patients enrolled in the CCMDD, 7960 (19%) had an available HbA1c result over the study period. A quarter of patients (2147/7960; 27%) were optimally controlled at their baseline HbA1c. Of those controlled at baseline, 695 (32%) patients had a repeat test available, with 35% (242/695) changing their status to sub-optimal control. Patients prescribed dual-therapy had a higher risk of sub-optimal glycaemic control (aHR: 1.503; 95% CI: 1.16–1.95; p-value=0.002) compared to those on monotherapy. HbA1c testing frequency per national guidelines (aHR: 0.46; 95% CI: 0.24–0.91; p-value=0.024) was associated with a lower hazard of sub-optimal glycaemic control.
Conclusions: HbA1c monitoring, in line with testing frequency guidelines, is needed to flag sub- optimally controlled patients who become ineligible for CCMDD enrolment. Patients receiving dual-therapy may require special consideration. Addressing these shortfalls can assist planning and implementation to achieve 2030 targets.
Extension of efficacy range for targeted malariaelimination interventions due to spillover effects
(NATURE PUBLISHING GROUP) Jade Benjamin-Chung; Haodong Li; Anna Nguyen; Gabriella B Heitmann; E et al; Immo Kleinschmidt