School of Geography, Archaeology and Environmental Studies (ETDs)

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    Detecting Disease in Citrus Trees using Multispectral UAV Data and Deep Learning Algorithm
    (University of the Witwatersrand, Johannesburg, 2024-06) Woolfson, Logan Stefan; Adam, Elhadi
    There is a high prevalence, in South Africa, of fruit tree related diseases infesting lemon trees, subsequently affecting overall crop yield and quality. Ultimately, the income for the farmers is significantly diminished and limits the supply of nutritional food crops for the South African population, who already suffer from a high incidence of malnutrition. Currently, there are various methods utilized to detect diseases in fruit trees, however they pose limitations in terms of efficiency and accuracy. By employing the use of drones and machine learning methods, fruit tree diseases could be detected at an earlier stage of development and with a much higher level of accuracy. Consequently, the chances of remedying the trees before the disease spreads is greatly improved, and the supply of nutritious fruit within South Africa is increased. This research report’s aim is to investigate the effectiveness of a deep learning algorithm for detecting and classifying diseases in lemon orchards using multispectral drone imagery. This entails assessing the performance of a pretrained ResNet-101 model, fine-tuned with additional sample images, in accurately identifying and classifying diseased lemon trees, specifically those affected by Phytophthora root rot. The methodology involves the utilization of a pretrained ResNet-101 model, a deep learning architecture, and the retraining of its layers with an augmented dataset from multispectral aerial drone images of a lemon orchard. The model is fine-tuned to enhance its ability to discern subtle spectral variations indicative of disease presence. The selection of ResNet-101 is grounded in its proven success in image recognition tasks and transfer learning capabilities. The results obtained demonstrated an impressive accuracy of 80%. The deep learning algorithm exhibited notable performance in distinguishing root rot-affected lemon trees from their healthy counterparts. The findings indicate the promise of utilizing advanced deep learning methods for timely and effective disease detection in agricultural farmlands, facilitating orchard management.
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    The Wind Energy Potential of South Africa’s Eastern Cape Province in a Changing Climate
    (University of the Witwatersrand, Johannesburg, 2024-10) Landwehr, Gregory Brent; Engelbrecht, Francois; Lennard, Chris
    Due to the abundance of wind and solar renewable energy resources across South Africa, and the comparative low cost of installation and operation of wind and solar energy infrastructure, it is inevitable that the country’s dependence on fossil fuels for energy will decline in the future. At a practical level, developing wind energy facilities entails a complex array of activities and the ~20-30 year life spans of such facilities intrinsically implies that they will experience climate change. However, insufficient research and related modelling have been undertaken in South Africa to quantify future variability and systematic changes in the wind resource as it relates to specific synoptic weather types and wind energy production. The aim of this thesis is to develop methodologies to understand the synoptic drivers of regional wind energy production potential and in turn assess how and why South Africa’s wind energy production potential may change as a function of changing circulation patterns in a changing climate. The wind energy potential of the Eastern Cape Province of South Africa is quantified using energy yield analysis techniques. These results are mapped onto commonly occurring synoptic types for the region to assign an energy potential to each. When the changing frequency of these synoptic weather types is calculated in a climate change impacted future using Global Climate Models, it is possible to quantify the change in wind energy potential in the long term. Results show that the synoptic-circulation pattern with the highest wind energy potential is the Atlantic Ocean ridging High with its centre at about 30 °S, behind a northward displaced mid-latitude cyclone. Global Climate Model projections of the frequency occurrence of these high energy synoptic states show a decrease in frequency at all global warming temperature thresholds and in turn a decrease in wind energy production. The likely cause of this being the poleward expansion of the descending limb of the Hadley circulation which shifts these synoptic systems southwards. The methodologies presented in this thesis provide South Africa with the necessary climate change risk assessment and mitigation capability to address these impacts on the wind energy sector in South Africa.
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    Study of the influence of gust fronts and topographical features in the development of severe thunderstorms across South Africa
    (University of the Witwatersrand, Johannesburg, 2024) Mofokeng, Puseletso Samuel; Engelbrecht, Francois A.; Bopape, Mary-Jane M.; Grab, Stefan W.
    South Africa experiences a variety of severe thunderstorms which occasionally leads to a large quantity of small-sized or large-sized hailstones, heavy rain and flash flooding, strong damaging straight-line winds, and/or even tornadoes. For the base period, June 2016 to June 2021, a significant percentage of these severe storms was triggered by topographic features. The Unified Model (UM) at 4 km horizontal grid resolution was used and found to be unable to predict topography-generated vertical wind shear and the associated severe thunderstorms. This inability of the model necessitated the development of a conceptual model by relating the rapid cooling of the cloud-top temperatures with high resolution topographic maps. This means, satellite images were used to deduce the connection of atmospheric fluids (gust fronts) with near linear, concave and/or downslope topographical features. Severe thunderstorms included those connected to the large amounts of vorticity advection (e.g. 500 hPa level), development of low-level mesoscale circulations within the synoptic settings and the resultant vertical wind shear in the lower tropospheric levels. Large amounts of negative vorticity advection are typical with strong horizontal shear and curvature; they are often correlated with trough axes that lean from the south-west to north-east. The usage of large amounts of negative vorticity advection transcends to whether discrete severe thunderstorms will be characterised by heavy rain and flash-flooding or hail with damaging winds. Moreover, the interaction of topography with gust fronts of the upwind thunderstorms linked with large amounts of negative vorticity advection is also investigated. The impacts of storms studied in this dissertation posed a major threat to property, livelihood, agriculture, human and animal lives or even immediate to residual economic loss. This research is aimed at improving the service level for the benefit of disaster management agencies and the public at large. An in-depth study of microscale events such as tornadoes and landspouts was also conducted to improve lead-time for their nowcasting.
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    Peat dynamics in the Angolan Highlands
    (University of the Witwatersrand, Johannesburg, 2023-03) Lourenco, Mauro Cesar; Woodborne, Stephan; Fitchett, Jennifer
    The Angolan Highlands is a war stricken, threatened, and under-studied area. The region is hydrologically and ecologically important and supports extensive tropical peatland deposits. Peatland preservation has been acknowledged to address climate change, is sensitive to drought and fire, and is directly influenced by vegetation and hydrological conditions. However, little research has been conducted in the Angolan Highlands. This study addresses gaps in the literature through four key contributions. The first is a critical review of peat definitions: the implications of disparate definitions are detailed, and a new proposed definition for peatlands in the interest of climate science is provided. The second is the first map of peatland extent in the Angolan Highlands, containing details on the age and growth dynamics. The study presents a conservative estimate of peatland extent that is much larger than previously estimated for Angola and is a crucial first step in facilitating the preservation of this deposit. The third contribution is the first historical assessment of drought and vegetation response in the region. This contains a 40-year drought and 20-year vegetation history, demonstrating that drought occurrence is increasing and there is a strong relationship between precipitation and the peatland vegetation region. The fourth contribution is the first assessment of the contemporary (2001-2020) fire regime of these peatlands, and reveals that among all land cover classes, peatlands burn more frequently and at a higher proportion. Investigation into the peat dynamics of the Angolan Highlands indicate that they have critical importance and are naturally resistant to both droughts and fire. Failure to preserve these deposits will have direct implications on the communities, environment, and surrounding areas.
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    Assessing the effectiveness of wetlands in the Krugersdorp Game Reserve in attenuating pollution from mines on the West Rand, South Africa
    (University of the Witwatersrand, Johannesburg, 2023) Sawuka, Noluthando Thulisile; Evans, Mary; Masindi Khuliso
    In South Africa, 48% of the country’s wetlands are critically endangered because of anthropogenic activities. Wetlands are an important part of the landscape and play a critical role including but not limited to improving water quality, habitat provision, and water storage. This research aimed to assess the effectiveness of wetland systemsin attenuating pollution from water discharged from abandoned gold mines in the Krugersdorp Game Reserve (KGR), West Rand. Eight (8) water samples were collected in the study site. Physico-chemical parameters were measured in situ, and chemical parameters were measured in the lab. The measured physico–chemical parameters from the majority of the sampled wetlands exceeded at least one of the stipulated water quality legislations, which included the General Authorization Limit Section 21f and h, 2013; Unit for TWQGR; Mine Health and Safety Act; and WUL wastewater in terms of the recorded pH, total dissolved solids, and salinity variables. Overall, a decreasing trend in pH level was observed from wetlands sampled upstream of the KGR to wetlands sampled downstream of the KGR, with the highest recorded pH level (Alkalinity: 8.9) obtained from the sampled wetland that was closest to the adjacent mining site upstream of theKGR whilst the lowest recorded pH level (Acidity: 3.9) obtained from a wetland sampling point that was further from the adjoining mine and downstream in the KGR. A weak and positive correlation (r=0.040) was obtained between the measured total dissolved solids and pH levels from the sampled wetlands, indicating minimal spatial variability. However, a strong positive correlation (r=0.999, Correlation is significant at the 0.01 level) was obtained between the measured total dissolved solids and salinity from the sampled wetlands. At least one of the limits stipulated by the water quality legislation was exceeded in terms of the analysed inorganic constituents from the sampled wetlands. The dominant ions recorded in the wetlands in increasing order are F, K, Cl, Mg, Na, Ca, and SO4. Mn and Si were the dominant metal concentrations recorded in most wetlands, with the former also showing exceedances when compared to the stipulated water quality guidelines. The recorded data from the measured physico–chemical parameters and analysed chemical variables indicated poor water quality in wetlands sampled downstream of the KGR and upstream of the KGR. Stringent measures in water quality monitoring need to be implemented to mitigate the environmental impacts associated with wastewater discharge into the receiving environment.
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    The political geography of hemp Cannabis in South Africa: A development critique
    (University of the Witwatersrand, Johannesburg, 2023-06) Moore, Wendell; Mnwana, Sonwabile; Wafer, Alex
    The discourse on Cannabis that is generally understood in the public domain, revolves mostly around its recreational uses and more recently its medicinal potential. The plants industrial usages and overall worth to society are often framed in relation to these more popular parts of Cannabis. The study focuses its attention on hemp Cannabis to tell a different story but acknowledges that all the uses of Cannabis are interlinked. Using an extensive desktop analysis, Cannabis webinars and conferences, as well as autoethnography, the thesis shows that there is in fact more to the plant than what first meets the eye. It especially illuminates two important dimensions of Cannabis that are often overlooked when discussing the plant. Firstly, by its nature Cannabis is political, which is deeply embedded in how the plant is understood in the geographic diaspora of the Global South. Secondly, it shows that any serious social scientific analysis of contemporary Cannabis development must think through how the ways of knowing, produced during prohibition, will become a part of the plant’s future. This thesis therefore argues for an appraisal and maintenance of the historical resistances of Cannabis used prior to legalization, if its development in the legal era is to be successful. To be sure, such innovative and alternative models of practical development should become a standard part of the geographies of all work economies. Moreover, making use of these forms of resistance is not about Cannabis gaining the approval from ‘the market’. In fact, the skills learnt while labouring for Cannabis, when it was prohibited, has become such a permanent feature of its development that liberal democratic consent is not an option. Therefore, the thesis proposes that Cannabis development delink from the prohibition narratives inscribed onto the plant. It continues by showing that the current medicalisation of Cannabis only updates gatekeeping models. Hence, an agrarian alternative was suggested that consolidates all the uses of Cannabis without undermining any one part of the plant. Lastly, the thesis documents the possibilities of gaining access into the industry for black people, the poor working class and women. What it argues is that ownership, just employment and leadership of Cannabis industries in South Africa must be repurposed so that ordinary people can also play a part in making sure the plants contemporary development is truly sustainable. Taken together, this is the critique of development that the political geography of hemp Cannabis in South Africa reveals.
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    Estimating rooftop solar energy potential using spatial radiation models and thermal remote sensing: The case of Witwatersrand University
    (University of the Witwatersrand, Johannesburg, 2023) Ndemera, Rudo Hilda; Adem, Ali K.; Adam, Elhadi
    The main purpose of this research was to estimate the University of Witwatersrand building’s rooftop solar energy potential using the GIS-based solar Area Solar Radiation (ASR) analyst upward hemispherical view shed algorithm. The two major datasets used in this research for rooftop solar energy potential modelling are building footprint data and the Digital Surface Model. Building footprint data, specifically rooftop area was extracted using machine learning CNTK unified toolkit and deep neural networks. The data was presented as individual polygon shape files for each building. The high-resolution Digital Surface Model imagery was sourced from the Advanced Land Observation Satellite. Pre-processing of the imagery was done for atmospheric correction. The DSM was then used in the Area Solar Radiation model to create an upward view shed for every point on the study area which is essential for computing solar radiation maps. The efficiency of using this algorithm is that it considers the shading effects caused by surrounding topography and surrounding man-made features, alterations in the azimuth angle and the position of the sun. Apart from the incoming solar radiation reaching the rooftops, the elevation and orientation of the rooftop cells limit the solar panel tilt angle and intensity of the incoming solar radiation, respectively. These factors were used in setting the suitability criteria together with solar radiation for the identification of suitable rooftop cells in this research. The relationship between land surface temperature and solar radiation values was assessed to determine if it can be used as an indicator for solar panel efficiency. Results from this research indicate that the University of Witwatersrand receives high levels of incoming solar radiation and has a high solar energy rooftop generation capacity that can meet the energy demand on campus. To improve accuracy of the research results, a drone could have been used to measure insolation across the study area to improve the spatial resolution. However, this was not possible due to various restrictions.
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    Mapping and monitoring land transformation of Boane district, Mozambique (1980 – 2020), using remote sensing
    (University of the Witwatersrand, Johannesburg, 2023) Dengo, Claudio Antonio; Atif, Iqra; Adam, Elhadi
    Although natural and environmental factors play a significant role in land transformation, human actions dominate. Therefore, to better understand the present land uses and predict the future, accurate information describing the nature and extent of changes over time is necessary and critical, especially for developing countries. It is estimated that these countries will account for 50% of the world's population growth in the next few years. Hence, this research was an attempt to assess and monitor land cover changes in Boane, Mozambique, over the past 40 years and predict what to expect in the next 30 years. This district has been challenged by a fast-growing population and land use dynamic, with quantitative information, driving forces and impacts remaining unknown. Through a supervised process in a cloud base Google Earth Engine platform, a set of five Landsat images at ten-year intervals were classified using a random forest algorithm. Seven land classes, i.e., agriculture, forest, built-up, barren, rock, wetland and water bodies, were extracted and compared through a pixel-by-pixel process as one of the most precise and accurate methods in remote sensing and geographic information system applications. The results indicate an active alternate between all land classes, with significant changes observed within agriculture, forest and build-up classes. As it is, while agriculture (-26.1%) and forest (-21.4%) showed a continuously decreasing pattern, build-up class (45.8%) increased tremendously. Consequently, over 69% of the forest area and 59% of the agricultural area shifted into build-up, i.e., was degraded or destroyed. Similarly, the conversion of barren land area (57.2%) and rock area (47.3%) into build-up indicates that those areas were cleaned. The overall classification accuracy averaged 90% and a kappa coefficient of 0.8779 were obtained. The CA-Markov model, used to assess future land uses, indicates that build-up will continue to increase significantly, covering 60% of the total area. From this finding, the land cover situation in the next 30 years will be critical if no action is taken to stop this uncontrolled urban sprawl. An adequate land use plan must be drawn, clearly indicating the locations for different activities and actions for implementation.
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    Evaluating the spatiotemporal changes of urban wetlands in Klip River wetland, South Africa
    (University of the Witwatersrand, Johannesburg, 2023-09) Nxumalo, Nolwazi; Knight, Jasper; Adam, Elhadi
    This study assesses the impacts of land use / land cover (LULC) change in an urban wetland over the past 30 years utilizing machine learning and satellite-based techniques. This study looked at LULC distributions in the Klip River wetland in Gauteng, South Africa. The aims and methods used in this study were: (1) to conduct a comprehensive analysis to map and evaluate the effects of LULC changes in the Klip River wetland spanning from 1990 to 2020, employing Landsat datasets at intervals of 10 years, and to quantify both spatial and temporal alterations in urban wetland area. (2) To predict the change in urban wetland area due to specific LULC changes for 2030 and 2040 using the MOLUSCE plugin in QGIS. This model is based on observed LULC including bare soil, built-up area, water, wetland, and other vegetation in the quaternary catchment C22A of the Klip River wetland, using multispectral satellite images obtained from Landsat 5 (1990), Landsat 7 (2000 and 2010) and Landsat 8 OLI (2020). (3) For the results of this study, thematic maps were classified using the Random Forest algorithm in Google Earth Engine. Change maps were produced using QGIS to determine the spatiotemporal changes within the study area. To simulate future LULC for 2030 and 2040, the MOLUSCE plugin in QGIS v2.8.18 was used. The overall accuracies achieved for the classified maps for 1990, 2000, 2010, and 2020 were 85.19%, 89.80%, 84.09%, and 88.12%, respectively. The results indicated a significant decrease in wetland area from 14.82% (6949.39 ha) in 1990 to 5.54% (2759.2 ha) in 2020. The major causes of these changes were the build-up area, which increased from 0.17% (80.36 ha) in 1990 to 45.96% (22 901 ha) in 2020—the projected years 2030 and 2040 achieved a kappa value of 0.71 and 0.61, respectively. The results indicate that built-up areas continue to increase annually, while wetlands will decrease. These LULC transformations posed a severe threat to the wetlands. Hence, proper management of wetland ecosystems is required, and if not implemented soon, the wetland ecosystem will be lost.
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    The role of institutional arrangements in post-flood disaster management in South Africa, focusing on Kwa-Zulu Natal Province, Mphela Township and Ncakubana Communities
    (University of the Witwatersrand, Johannesburg, 2023-10) Nyide, Sindisiwe; Grab, Stefan; Simatele, Mulala Danny
    South African officials and communities grapple with various matters after flood disasters. This thesis used a combination of qualitative and quantitative data collection approaches to explore possible systematic and structural weaknesses in addressing post-flood disasters in South Africa. The study investigated whether post-disaster management in disaster-vulnerable urban and rural communities contributes towards disaster resilience and adaptive capacity to achieve sustainable development. The need stemmed from the Country's high frequency and magnitude of disasters, including floods, droughts, and fires. The Government implemented different policies and strategies after 1994 to address flood disasters. While acknowledging some success in managing these disasters with the current adaptive measures, the frequency and intensity of disasters have increased, causing significant loss of life, environmental damage, and properties, particularly among the vulnerable population. Since this was a national study, participants came from across South Africa. The random sampling selected 35 Ncakubana Village and Mphela Township community members. Other selected participants were seven and six focus group members, respectively. In contrast, purposive and snowball samples chose 34 disaster management officials. Moreover, the purposive sampling selected two ward councillors and six advisory forum members. There were open-ended and closed-ended questions in the interview schedules and questionnaire surveys. The researcher also used observation to gather information on variables of interest during transect walks in the study areas. The study conducted an intensive documentary analysis to obtain more information. Descriptive statistical techniques, Microsoft Excel, and Statistical Package for the Social Sciences were employed to examine the quantitative data. Thematic analysis was for qualitative data analysis to review data from open-ended questions and literature. The study employed Atlasti software for inductive content analysis to identify research codes and themes and the Word Cloud tool to visualise textual data. For quantitative results, 33 disaster management officials responded that disaster-specific Acts and Policies are in place. According to 21 disaster management officials, or 62% of all participants, their organisations have vulnerable groups' specific policies. Multistakeholder complications were the most frequently mentioned challenge by participants. They mentioned them 23 times, 68% of the total participants. Challenges stated, among others, included funding and administrative matters. Most of the respondents, 75% identified funding as the biggest problem. Qualitatively, the thesis uncovered that disaster management is a multi-sectoral and multidisciplinary field. Although various institutional arrangements exist, they do not seem appropriate for assisting vulnerable groups post-disaster. Floods appeared to be the most frequent natural disaster in South Africa. Floods severely affected vulnerable people, particularly women, the elderly, children, and people with physical disabilities. While officials have made some progress on implementing post-flood disaster projects, they appear inadequate to assist vulnerable groups in dealing with floods. Furthermore, regrettably, despite the level of success in addressing disasters, most measures have failed to achieve the intended results for various reasons. The participants identified multiple tangible and intangible opportunities. They subsequently proposed that Disaster Management Centres develop various noteworthy documents, intensify the dissemination of post-disaster information across numerous platforms, obtain post-disaster funding and adequate personnel, and establish or revitalise structures. The suggested consolidated long-term measures by the participants yielded a proposed South African Post-flood Disaster Checklist or Model, which was non-existent in South Africa. By implementing more effective and efficient post-disaster measures, the proposed tool can help policymakers and strategic partners standardise post-disaster resilience and adaptive capacity in various sectors' sustainability contexts. The aim is to have post-flood disaster resilient communities with adaptive capacity to achieve sustainable development.