Electronic Theses and Dissertations (Masters)

Permanent URI for this collectionhttps://hdl.handle.net/10539/37999

Browse

Subject: search.filters.subject.SDG-4: Quality education

Search Results

Now showing 1 - 5 of 5
  • Thumbnail Image
    Item
    The Gene Catalogue and Functional Analysis of the Gut Microbiome of Lions in Etosha National Park
    (University of the Witwatersrand, Johannesburg, 2024-09) Belger, Carl Warner; Hetem, Robyn; Hazelhurst, Scott
    Characterising the microbiomes of free-living mammals may aid conservation efforts, yet the gut microbiome of carnivores is underrepresented. This study represents the first description of the gut microbiome of free-living African lions (Panthera leo melanochaita). Faecal samples from 20 lions were collected in Etosha National Park, Namibia and microbial DNA was extracted. Samples were then whole genome sequenced, and classified using MetaPhlAn and Genome Taxonomy Database toolkit. The two most abundant bacterial genera in the lions’ gut microbiomes were Bacteroides (16.9%) and Phocaeicola (16.6%). Microbiome diversity was similar between the sexes and across seasons as assessed through Bray-Curtis dissimilarity and Shannon diversity index. The genus Clostridium_AH was more abundant in male lions (P = 0.007; d.f. = 22), while Aphodousia (P = 0.003; d.f. = 22) was more abundant in females. Lions captured in winter had a high abundance of Plesiomonas relative to those captured in summer (P = 0.008), whereas lions captured in summer a high abundance of Dysosmobacter (P = 0.038; d.f. = 22), Pelethomonas (P = 0.021; d.f. = 22), Metalachnospira (P = 0.033; d.f. = 22) and Clostridium Q (P = 0.012; d.f. = 22) compared to those captured in winter. Following various taxonomic classification approaches, a third of the reads (33.6%) present in the lion gut microbiome remained unclassified. We constructed 272 metagenome assembled genomes, from seven bacterial phyla, representing mostly new species which will contribute to understanding of the carnivore gut microbiome.
  • Thumbnail Image
    Item
    Landscape-scale carbon stocks in the subtropical thicket of the Baviaanskloof, South Africa
    (University of the Witwatersrand, Johannesburg, 2024-08) Kooverjee, Neha; Smart, Kathleen; Fisher, Jolene; Scholes, Bob
    South Africa’s subtropical thicket biome has garnered interest for its potential for carbon sequestration through the restoration of degraded land, funded locally and internationally by the carbon market. Accurate carbon estimation of pre- and post-restoration carbon storage is key to monitoring the progress of restoration efforts and determining accurate estimates of carbon increase. Most past thicket studies have based landscape-scale carbon estimates on plot data alone, without accounting for the spatial variation in factors such as soil depth, resulting in overestimates of the average potential carbon that can be stored. The aim of this research was to estimate and create maps showing the spatial distribution of the thicket carbon stocks in the Baviaanskloof Nature Reserve, South Africa, by calculating the amount of carbon stored in the soil, woody biomass, root biomass and litter biomass across the thicket area of the reserve using plot data with remote sensing imagery. Soil organic carbon was estimated using soil profile data collected in the same primary catchment as the Baviaanskloof and extrapolated across the landscape using a Random Forest-based regression model. Woody carbon was estimated using previously recorded in situ carbon recordings. This data was then extrapolated across the landscape using raster data for vegetation height and cover, climate data, and elevation as predictor variables. Root and litter carbon were then calculated individually based on the woody carbon estimates and ratios of root and litter carbon to woody carbon from a past study. The average soil organic carbon (37.7 ± 29 t ha-1), woody carbon (18.1 ± 4 t ha-1), root carbon (3.1 ± 0.7 t ha-1), and litter carbon (2.4 ± 0.5 t ha-1) estimated in this study for intact thicket are all lower to varying degrees than those of past thicket studies that were based solely on plot data, indicating the importance of accounting for variation in the landscape and its effect on carbon stocks. The results of this study indicate that slope position, a proxy for soil depth, has a significant effect on thicket carbon stock. Woody carbon, root carbon and litter carbon estimates significantly decreased downslope, but soil organic carbon, the largest carbon pool in thicket, significantly increased downslope. In general, the results also indicate an increase in carbon after restoration, however, an illogical trend of lower potential root and litter carbon compared to current carbon in degraded thicket is present, indicating that the results of this study are not reliable for restoration planning and decision-making. This may be due to the inaccuracy of global Light Detection and Ranging (LiDAR) products, such as the Global Land Analysis and Discovery (GLAD) canopy height dataset, over non-forested areas such as thicket which are much shorter. Accurate estimates of current and potential carbon and accurate monitoring of restoration is important in tracking South Africa’s progress towards its biodiversity conservation goals under the Convention on Biological Diversity, and carbon emission reduction goals under the Paris Agreement. With access to locally captured LiDAR imagery that is suited to the short, dense structure of thicket vegetation and the topography of the landscape, and a larger database of in situ thicket carbon recordings, the methods used in this study could be employed to calculate more accurate carbon estimates and aid in directing restoration efforts to the most appropriate areas.
  • Thumbnail Image
    Item
    Assessing habitat selection of grassland rodents in the Cradle of Humankind
    (University of the Witwatersrand, Johannesburg, 2024) Pinto, Catiuscia-Jade; Mackay, Megan; Pillay, Neville
    Habitat selection is a decision-making process undertaken by animals to select an appropriate environment suitable for fulfilling their survival and reproductive needs. These decisions are driven by a complex of biotic and abiotic factors. Habitat selection relies on how an animal interacts with its environment and is species-specific. The vegetation structure and composition influence how smaller animals, such as rodents, obtain food and cover, and are thus critical for their survival. The aim of my study was to assess the population demography and habitat selection of nocturnal rodents in two grassland sites located within the Cradle of Humankind Nature Reserve, Krugersdorp, Gauteng Province, South Africa. I obtained rodent data using Capture-Mark-Recapture (CMR) methods, and vegetation data were obtained through randomised quadrate sampling. The following six rodent species were sampled, Gerbilliscus leucogaster, Lemniscomys rosalia, Mastomys coucha, Micaelamys namaquensis, Mus minutoides and Otomys angoniensis. Rodent abundance differed between summer and winter, with winter showing a higher abundance, but richness and diversity indices did not differ significantly between sites or seasons. The three most common species, G. leucogaster, M. coucha and O. angoniensis, were selected for further population demography analyses. The demography of G. leucogaster, was mostly associated with the season since seasonal fluctuations were observed in their population size (higher in summer), reproductive activity (more active in summer) and body condition (higher in winter). Mastomys coucha was the most abundant species in the study, since it had the highest number of sampled individuals in both summer and winter, although its demography was not influenced by external factors (e.g.,, season, vegetation height, vegetation cover) recorded in both summer and winter. Otomys angoniensis had a positive relationship with vegetation height and rodents’ body condition. The three species were able to coexist with one another due to differences in foraging strategies, reproductive strategies, spatial and dietary partitioning, which help to facilitate habitat selection and illustrate that habitat selection is species specific. Key words: Rodents, habitat selection, Gerbilliscus leucogaster, Mastomys couch
  • Thumbnail Image
    Item
    An ethnobotanical study of indigenous knowledge of the medicinal plants used by traditional healers in the rural communities of Nkomazi Local Municipality, Mpumalanga province
    (University of the Witwatersrand, Johannesburg, 2024) Khoza, Nompendulo; Dukhan, Shalini; Ramalepe, Phillemon; Risenga, Ida
    Traditional medicine continues to significantly impact many people’s lives amid all the advancements in modern medicine. Many rural communities in Mpumalanga province depend on indigenous traditional medicines to manage various ailments. The available research on the traditional usage of medicinal plants among rural communities in Mpumalanga is highly fragmented and under-researched. The decline of medicinal plant populations has led stakeholders to take various initiatives to counteract over-exploitation, including cultivation as a viable conservation approach. However, the scientists' inadequate understanding of the acceptance of cultivated medicinal plants by traditional healers is one of the issues contributing to the failure of medicinal plant cultivation programs. Consequently, this study aimed to document medicinal plants utilised by the Nkomazi Local Municipality's traditional healers and assess opportunities and constraints for medicinal plant conservation in the Nkomazi Local Municipality. The ethnobotanical data was obtained through semi-structured questionnaires and guided field walks with traditional healers. Individual interviews were conducted with ten traditional healers from eight villages across Nkomazi during field visits between July 2021 and February 2022. The study employed qualitative and quantitative approaches to understand traditional healers' perspectives concerning the ethnobotanical significance and medicinal plant conservation. The study found that the indigenous knowledge of medicinal plants in the Nkomazi Local Municipality is diverse, encompassing 111 species from 59 different families employed to treat 70 ailments. Most of the reported medicinal plants for this study are of Least Concern. Additionally, the top fourteen most reported species in the Nkomazi Local Municipality included commercially valuable plants such as Psidium guajava, Ricinus communis, Sclerocarya birrea, Aloe ferox, Aloe maculata, Leonotis leonurus, and Moringa oleifera. Most of the Nkomazi Local Municipality's traditional healers did not know about protected plant species and the National Environmental Management Act (NEMA). Traditional healers were aware of the decline in wild populations of medicinal plants, which they attributed to various factors such as overharvesting. Diviner’s and herbalist perception of using cultivated plants did not differ significantly (𝜒2=0.4762, df=1, P= 0. 490). The study provided a comprehensive inventory of medicinal plants utilised by Nkomazi traditional healers and essential data for future assessments of the use local use of indigenous medicinal plants.
  • Thumbnail Image
    Item
    The Assessment of the Current Geographical Information System (GIS) initiatives in the public enterprises of Swaziland
    (University of the Witwatersrand, Johannesburg, 2022) Khumalo, Malungisa Blessing; Adam, Elhadi
    There is a growing use of geographic information systems (GIS) within the public sector in many countries. GIS require considerable financial resources and investment in information and communication technology (ICT) and human resources, which are primarily financed by public funds. The growth in adoption is partly influenced by the promising potential of GIS that has been widely discussed in the literature on GIS. The usefulness and application of GIS in aiding decision making and in public policy formulation and implementation have also been widely discussed in the literature on GIS. To examine the effectiveness of GIS in public policy, one has to develop a mechanism for measuring the success achieved by the implementation of GIS in decision making. However, the methodologies for the evaluation of the use of GIS in the public sector are mainly lacking. The aims of this research were to evaluate the effective use of GIS in the public sector in Swaziland. Three organisations were selected, namely the Swaziland Posts and Telecommunications (SPTC), Swaziland Water Services Corporation (SWSC) and Swaziland National Housing Board (SNHB). Like in most developing countries, the lack of GIS evaluation to improve implementation is a challenge for these organisations. The current GIS applications at SPTC, SWSC and SNHB were evaluated using maturity, value and GIS product assessments. Four methods of analysis were used for data analysis: GIS maturity calculation; relative frequency of maturity calculation; gap analysis; and GIS value assessment. The results found that the SPTC, SWSC and SNHB were all in the exploitation stage of maturity. The overall relative frequency of maturity in the dimensions is the following: 35% of indicators are in the exploration stage; 56% are in the exploitation stage; and 9% are in the enterprise stage. The gap analysis shows that the organisations are in the exploitation stage of maturity. Cost prevention, coordination, employee satisfaction, better data management, time saving and better quality of information were regarded as the main ways in which GIS add value to organisations. The GIS product assessment results show that the overall compliance rate with the cartographic standards is 57.09%.