1. Academic Wits Research Publications (Faculties submissions)

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Characterization of putative DD-carboxypeptidase-encoding genes in Mycobacterium smegmatis
(Nature Research, 2019-03) Ealand, Christopher S.; Asmal, Rukaya; Mashigo, Lethabo; Campbell, Lisa; Kana, Bavesh D.
Penicillin binding proteins (PBPs) are the target of numerous antimicrobial agents that disrupt bacterial cell wall synthesis. In mycobacteria, cell elongation occurs through insertion of nascent cell wall material in the sub-polar region, a process largely driven by High Molecular Weight PBPs. In contrast, the function of DD-carboxypeptidases (DD-CPases), which are Low Molecular Weight Class 1C PBPs, in mycobacteria remains poorly understood. Mycobacterium smegmatis encodes four putative DD-CPase homologues, which display homology to counterparts in Escherichia coli. Herein, we demonstrate that these are expressed in varying abundance during growth. Deletion of MSMEG_1661, MSMEG_2433 or MSMEG_2432, individually resulted in no defects in growth, cell morphology, drug susceptibility or spatial incorporation of new peptidoglycan. In contrast, deletion of MSMEG_6113 (dacB) was only possible in a merodiploid strain expressing the homologous M. tuberculosis operon encoding Rv3627c (dacB), Rv3626c, Rv3625c (mesJ) and Rv3624c (hpt), suggestive of essentiality. To investigate the role of this operon in mycobacterial growth, we depleted gene expression using anhydrotetracyclineresponsive repressors and noted reduced bipolar peptidoglycan synthesis. These data point to a possible role for this four gene operon, which is highly conserved across all mycobacterial species, in regulating spatial localization of peptidoglycan synthesis.
A tunable Josephson platform to explore many-body quantum optics in circuit-QED
(Nature Research, 2019-02) Snyman, Izak; Martínez, Javier Puertas; Léger, Sébastien; Gheeraert, Nicolas; Dassonneville, Rémy; Planat, Luca; Foroughi, Farshad; Krupko, Yuriy; Buisson, Olivier; Naud, Cécile; Hasch-Guichard, Wiebke; Florens, Serge; Roch, Nicolas
The interaction between light and matter remains a central topic in modern physics despite decades of intensive research. Coupling an isolated emitter to a single mode of the electromagnetic field is now routinely achieved in the laboratory, and standard quantum optics provides a complete toolbox for describing such a setup. Current efforts aim to go further and explore the coherent dynamics of systems containing an emitter coupled to several electromagnetic degrees of freedom. Recently, ultrastrong coupling to a transmission line has been achieved where the emitter resonance broadens to a significant fraction of its frequency, and hybridizes with a continuum of electromagnetic (EM) modes. In this work we gain significantly improved control over this regime. We do so by combining the simplicity and robustness of a transmon qubit and a bespoke EM environment with a high density of discrete modes, hosted inside a superconducting metamaterial. This produces a unique device in which the hybridisation between the qubit and many modes (up to ten in the current device) of its environment can be monitored directly. Moreover the frequency and broadening of the qubit resonance can be tuned independently of each other in situ. We experimentally demonstrate that our device combines this tunability with ultrastrong coupling and a qubit nonlinearity comparable to the other relevant energy scales in the system. We also develop a quantitative theoretical description that does not contain any phenomenological parameters and that accurately takes into account vacuum fluctuations of our large scale quantum circuit in the regime of ultrastrong coupling and intermediate non-linearity. The demonstration of this new platform combined with a quantitative modelling brings closer the prospect of experimentally studying many-body effects in quantum optics. A limitation of the current device is the intermediate nonlinearity of the qubit. Pushing it further will induce fully developed many-body effects, such as a giant Lamb shift or nonclassical states of multimode optical fields. Observing such effects would establish interesting links between quantum optics and the physics of quantum impurities
Spin-3/2 dark matter in a simple t-channel model
(Springer Open, 2018-11) Khojali, Mohammed Omer; Kumar, Mukesh; Cornell, Alan S.; Goyal, Ashok
We consider a spin-3/2 fermionic dark matter (DM) particle interacting with the Standard Model quarks through the exchange of a charged and coloured scalar or vector mediator in a simple t-channel model. It is found that for the vector mediator case, almost the entire parameter space allowed by the observed relic density is already ruled out by the direct detection LUX data. No such bounds exist on the interaction mediated by scalar particles. Monojet + missing energy searches at the Large Hadron Collider provide the most stringent bounds on the parameters of the model for this case. The collider bounds put a lower limit on the allowed DM masses.
Dimethylformamide is a novel nitrilase inducer in Rhodococcus rhodochrous
(Springer, 2018-09) Chhiba-Govindjee, V. P.; Brady, D.; Mathiba, K.; van der Westhuyzen, C. W.; Steenkamp, P.; Rashamuse, J. K.; Stoychev, S.
Nitrilases are of commercial interest in the selective synthesis of carboxylic acids from nitriles. Nitrilase induction was achieved here in three bacterial strains through the incorporation of a previously unrecognised and inexpensive nitrilase inducer, dimethylformamide (DMF), during cultivation of two Rhodococcus rhodochrous strains (ATCC BAA-870 and PPPPB BD1780), as well as a closely related organism (Pimelobacter simplex PPPPB BD-1781). Benzonitrile, a known nitrilase inducer, was ineffective in these strains. Biocatalytic product profiling, enzyme inhibition studies and protein sequencing were performed to distinguish the nitrilase activity from that of sequential nitrile hydratase-amidase activity. The expressed enzyme, a 40-kDa protein with high sequence similarity to nitrilase protein Uniprot Q-03217, hydrolyzed 3-cyanopyridine to produce nicotinic acid exclusively in strains BD-1780 and BD-1781. These strains were capable of synthesising both the vitamin nicotinic acid as well as β-amino acids, a compound class of pharmaceutical interest. The induced nitrilase demonstrated high enantioselectivity (>99%) in the hydrolysis of 3-amino-3-phenylpropanenitrile to the corresponding carboxylic acid.
Free field primaries in general dimensions: counting and construction with rings and modules
(Springer, 2018-08) de Mello Koch, Robert
We define lowest weight polynomials (LWPs), motivated by so(d, 2) representation theory, as elements of the polynomial ring over d × n variables obeying a system of first and second order partial differential equations. LWPs invariant under Sn correspond to primary fields in free scalar field theory in d dimensions, constructed from n fields. The LWPs are in one-to-one correspondence with a quotient of the polynomial ring in d × (n − 1) variables by an ideal generated by n quadratic polynomials. The implications of this description for the counting and construction of primary fields are described: an interesting binomial identity underlies one of the construction algorithms. The product on the ring of LWPs can be described as a commutative star product. The quadratic algebra of lowest weight polynomials has a dual quadratic algebra which is non-commutative. We discuss the possible physical implications of this dual algebra.
Maximizing access and minimizing barriers to research in low- and middle-income countries: open access and health equity
(Springer, 2023-11) Saloojee, Haroon; Pettifor, John M.
Access to published research has always been difcult for researchers and clinicians in low- and middle-income countries,because of the cost of and lack of access to the relevant publications. The dramatic recent increase in electronic research publications has resulted in a marked improvement in reader access to these publications through their mainly Open Access policies, however the costs of processing of submissions and publication have now become the burden of the researchers wishing to publish, rather than the readers. For many researchers working in LMIC, the Article Processing Charges (APC) are prohibitive, hampering the publication of research being conducted in and relevant to these countries. A number of grant funding agencies and international not-for-proft organizations are trying to address these issues by including funding for article publications in their grants, or by supporting publishing entities by subsiding the cost of publication, but more needs to be done by major journal publishers through markedly reducing the APC being charged to researchers in LMIC for open access facilities.
Kondo effect and enhanced magnetic properties in gadolinium functionalized carbon nanotube supramolecular complex
(Nature Research, 2018-05) Ncube, S.; Coleman, C.; Strydom, A.; Flahaut, E.; de Sousa, A.
We report on the enhancement of magnetic properties of multiwalled carbon nanotubes (MWNTs) functionalized with a gadolinium based supramolecular complex. By employing a newly developed synthesis technique, we find that the functionalization method of the nanocomposite enhances the strength of magnetic interaction, leading to a large effective moment of 15.79µB and nonsuperparamagnetic behavior, unlike what has been previously reported. Saturating resistance at low temperatures is ftted with the numerical renormalization group formula, verifying the Kondo effect for magnetic impurities on a metallic electron system. Magnetoresistance shows devices fabricated from aligned gadolinium functionalized MWNTs (Gd-Fctn-MWNTs) exhibit spin-valve switching behaviour of up to 8%. This study highlights the possibility of enhancing magnetic interactions in carbon systems through chemical modification, moreover, we demonstrate the rich physics that might be useful for developing spin based quantum computing elements based on one-dimensional (1D) channels.
Minimising the risk of thermally induced cracking in mass concrete structures through suitable materials selection and processing
(Springer, 2018) Ballim, Yunus
The hydration of cement is an exothermic reaction which generates around 300 kJ/kg of cement hydrated. In mass concrete structures such as dams and large foundations, this heat of hydration causes a significant rise in temperature in the internal sections of the concrete. If thermal gradients between the internal sections and the near-surface zone of the concrete element are sufficiently large, the thermal stress can cause cracking of the concrete. This cracking may cause functional or structural problems in the operation of the structure. In order to minimise the potential for such cracking, it is necessary to minimise the rate and amount of heat that is evolved, particularly during the early period of the hydration process. This can be achieved by design engineers and concrete technologists through judicious selection and processing of concrete-making materials. This paper presents the observations and results obtained over a number of years from adiabatic testing of concretes, computational modelling of temperature development in large concrete structures and direct temperature measurements in actual structures, with a view to understanding the effects of concrete-making materials on temperature development in concrete. The paper considers the effects of different types of rock aggregates, different types of Portland cement, fineness of grinding of the cement, the addition of supplementary cementitious materials and variations in the concrete starting temperature on temperature development in a large concrete element over time. The results indicate that using a coarser ground cement, adding significant amounts of supplementary cementitious materials and cooling the concrete mixture before placing has a more significant effect in reducing the risk of cracking than varying the aggregate type of the Portland cement type.
Making a Mark: Wits School of Construction Economics and Management and Its Contribution to the Construction and Property Fields
(University of the Witwatersrand, Johannesburg, 2024) Laryea, Samuel; Smit-Stachowski, Alexandra; Mphuti, Bongi
This book is a historical account on the Wits School of Construction Economics and Management, its contributions and impact in society, which is very significant and leaves a positive impression of academic and industry development, despite historical hurdles. It looks at the past, present, and future of the School in the broader context of South African history and the overall development of the university. The process of writing this book has been both challenging and exciting with interesting discoveries about the academic disciplines and the growth trajectory of the School. It was challenging uncovering information from various sources within the university and external sources. It has also been an interesting process learning about the rich history and contributions of a key School within the university to the South African and global society. This book chronicles the careers of some graduates of the School who served in the highest leadership and management roles, and made an indelible mark in the construction industry locally and internationally. The School’s graduates have made substantial contributions to the growth and advancement of the South African construction and property sectors and their respective statutory councils including the South African Council for Quantity Surveying Profession (SACQSP), South African Council for Project and Construction Management Professions (SACPCMP) and the South African Council for the Property Valuers Profession (SACPVP). The School’s graduates have also played leading roles in major construction firms that have built some of the iconic buildings in South Africa and other parts of the world. In recent years, many of the School’s graduates are increasingly being recruited by firms in Europe, Middle East, Australia, and the US, indicating the quality of their education and their value to employers and the global construction industry.
New modern and Pleistocene fossil micromammal assemblages from Swartkrans, South Africa: Paleobiodiversity, taphonomic, and environmental context
(Elsevier, 2024-03) Steininger, Christine; Clarke, Ronald J.; Caruana, Matthew V.; Kuman, Kathleen; Pickering, Travis Rayne; Linchamps, Pierre; Stoetzel, Emmanuelle; Amberny, Laurie
The oldest deposit at the hominin-bearing cave of Swartkrans, South Africa, is the Lower Bank of Member 1, dated to ca. 2.2 million years ago. Excavations of this unit have produced a diverse and extensive mammalian fossil record, including Paranthropus robustus and early Homo fossils, along with numerous Oldowan stone tools. The present study focuses on the taxonomic analysis of the micromammalian fossil assemblage obtained from recent excavations of the Lower Bank, conducted between 2005 and 2010, as part of the Swartkrans Paleoanthropological Research Project. The taxonomic composition of this assemblage is dominated by Mystromys, a rodent indicative of grassland environments. Taphonomic analysis indicates an accumulation of prey by Tyto alba (Barn owl) or a related species. Environments inferred from this evidence reflect an open landscape primarily covered by grassland vegetation, but they also feature components of wooded areas, rocky outcrops, and the proximity of a river. The Swartkrans fossil assemblage is compared with Cooper's D (dated to ca. 1.4 Ma) and a modern coprocoenosis of Bubo africanus (spotted eagle-owl) collected within the Swartkrans cave for taxonomic, taphonomic, and paleoecological perspectives. Contrasting fossil and modern micromammalian data provide a better understanding of accumulation processes and facilitate a diachronic reconstruction of changes in climate and landscape evolution. Issues regarding paleoenvironmental reconstruction methodologies based on micromammals are also discussed.

1. Academic Wits Research Publications (Faculties submissions)

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