Gene expression studies in Arabidopsis in response to South African Cassava Mosaic Virus infection utilizing microarrays
Date
2006-11-16T12:39:26Z
Authors
Pierce, Erica Joanna
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Abstract
Cassava Mosaic Disease is the most devastating disease affecting cassava (Manihot esculenta Crantz)
crops worldwide. This disease is associated with eight species of geminiviruses, all belonging to the genus
Begomovirus of the family Geminiviridae. In South Africa, in particular, CMD is caused by South African
cassava mosaic virus (SACMV). Currently, there are no adequate methods for control of this disease as
mechanisms within virus-host interactions are poorly understood. This brings about the need for
development of virus-disease control strategies. This study was therefore conducted to identify the host’s
response to an invading virus. The model plant, Arabidopsis was chosen as it is a well-characterized plant
system, with expression databases readily available as its entire genome has been sequenced. This study
was conducted, firstly, to phenotypically determine if Arabidopsis was resistant or susceptible to SACMV
infection, and secondly, to identify the host’s response to pathogen infection on a molecular level through
gene expression studies utilizing microarrays. Results from the symptomatology study revealed that
Arabidopsis plants were fully symptomatic 28 days post-inoculation, displaying characteristic disease
symptoms such as stunting, yellowing, and leaf deformation. This indicated that Arabidopsis was
susceptible to SACMV infection. Microarray analyses revealed 86 differentially expressed genes, of
which 48 showed up-regulation and 38 down-regulation. Relative quantification real-time PCR was
performed on selected genes to confirm these results. Many up-regulated genes were shown to be
primarily involved in a general stress response induced by the host, whereas those genes that were downregulated
seemed to be involved in more specific responses to viral invasion, probably a consequence of
suppression of host genes by SACMV to enhance its own replication. The majority of genes identified fell
under the predominant functional categories involved in metabolism, transcription, and transport. To our
knowledge, this is the first study in which a DNA geminivirus has been used in a host-pathogen
interaction utilizing microarrays.
Description
Student Number : 9610284H -
MSc dissertation -
School of Molecular and Cell Biology -
Faculty of Science
Keywords
gene expression, South African Cassava Mosaic Virus, Microarrays