Faculty of Science (Research Outputs)

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Testing the suitability of portable X-Ray Fluorescence (pXRF) analysis of dried herbarium specimens to detect Ni hyperaccumulators in South Africa
(Elsevier, 2023-07) Balkwill, Kevin; Samojedny Jr. Thomas J.; Rajakaruna, Nishanta; Siebert, Stefan J.
Metal hyperaccumulators accumulate particular metals or metalloids in their leaves to concentrations hundreds or thousands of times greater than is normal for most plants. Globally, Ni is the most often hyperaccumulated metal, with 532 hyperaccumulator species documented to date. Hyperaccumulators have attracted much attention as potential candidates for green technologies, including phytoremediation and agromining. In South Africa, six serpentinite-associated plants in the genera Berkheya and Senecio hyperaccumulate Ni (to > 0.1% of leaf tissue dry weight). It is surprising that only six of about 70 Berkheya and 290 Senecio species native to South Africa hyperaccumulate Ni, given about ∼10–20% of taxa from each genus occur on serpentinite. While it is costly and time consuming to field collect and chemically analyze leaves of all species in these genera, a novel method (portable X-Ray Fluorescence or pXRF analysis of herbarium specimens) allows for rapid (100 s of specimens/day) and non-destructive measurement of Ni in dry herbarium specimens. We tested the accuracy of this approach on known Ni hyperaccumulators vouchered at two South African herbaria (C.E. Moss Herbarium (J) of the University of the Witwatersrand and A.P. Goossens Herbarium (PUC) from North-West University). While the absolute concentrations of Ni determined by ICP-MS and pXRF were not always directly in agreement, we had 100% success in confirming those that were known to hyperaccumulate Ni with those that did not. We propose pXRF as a cheap, effective, and efficient approach to rapidly screen herbarium specimens across South Africa to discover additional metal hyperaccumulators for much-needed remediation purposes.
Generalized hot attractors
(Springer, 2019-03) Goldstein, Kevin; Jejjala, Vishnu; Mashiyane, James Junior; Nampuri Suresh
Non-extremal black holes are endowed with geometric invariants related to their horizon areas. We extend earlier work on hot attractor black holes to higher dimensions and add a scalar potential. In addition to the event and Cauchy horizons, when we complexify the radial coordinate, non-extremal black holes will generically have other horizons as well. We prove that the product of all of the horizon areas is independent of variations of the asymptotic moduli further generalizing the attractor mechanism for extremal black holes. In the presence of a scalar potential, as typically appears in gauged supergravity, we find that the product of horizon areas is not necessarily the geometric mean of the extremal area, however. We outline the derivation of horizon invariants for stationary backgrounds.
A tunable Josephson platform to explore many-body quantum optics in circuit-QED
(Nature Research, 2019-02) Snyman, Izak; Martínez, Javier Puertas; Léger, Sébastien; Gheeraert, Nicolas; Dassonneville, Rémy; Planat, Luca; Foroughi, Farshad; Krupko, Yuriy; Buisson, Olivier; Naud, Cécile; Hasch-Guichard, Wiebke; Florens, Serge; Roch, Nicolas
The interaction between light and matter remains a central topic in modern physics despite decades of intensive research. Coupling an isolated emitter to a single mode of the electromagnetic field is now routinely achieved in the laboratory, and standard quantum optics provides a complete toolbox for describing such a setup. Current efforts aim to go further and explore the coherent dynamics of systems containing an emitter coupled to several electromagnetic degrees of freedom. Recently, ultrastrong coupling to a transmission line has been achieved where the emitter resonance broadens to a significant fraction of its frequency, and hybridizes with a continuum of electromagnetic (EM) modes. In this work we gain significantly improved control over this regime. We do so by combining the simplicity and robustness of a transmon qubit and a bespoke EM environment with a high density of discrete modes, hosted inside a superconducting metamaterial. This produces a unique device in which the hybridisation between the qubit and many modes (up to ten in the current device) of its environment can be monitored directly. Moreover the frequency and broadening of the qubit resonance can be tuned independently of each other in situ. We experimentally demonstrate that our device combines this tunability with ultrastrong coupling and a qubit nonlinearity comparable to the other relevant energy scales in the system. We also develop a quantitative theoretical description that does not contain any phenomenological parameters and that accurately takes into account vacuum fluctuations of our large scale quantum circuit in the regime of ultrastrong coupling and intermediate non-linearity. The demonstration of this new platform combined with a quantitative modelling brings closer the prospect of experimentally studying many-body effects in quantum optics. A limitation of the current device is the intermediate nonlinearity of the qubit. Pushing it further will induce fully developed many-body effects, such as a giant Lamb shift or nonclassical states of multimode optical fields. Observing such effects would establish interesting links between quantum optics and the physics of quantum impurities
Spin-3/2 dark matter in a simple t-channel model
(Springer Open, 2018-11) Khojali, Mohammed Omer; Kumar, Mukesh; Cornell, Alan S.; Goyal, Ashok
We consider a spin-3/2 fermionic dark matter (DM) particle interacting with the Standard Model quarks through the exchange of a charged and coloured scalar or vector mediator in a simple t-channel model. It is found that for the vector mediator case, almost the entire parameter space allowed by the observed relic density is already ruled out by the direct detection LUX data. No such bounds exist on the interaction mediated by scalar particles. Monojet + missing energy searches at the Large Hadron Collider provide the most stringent bounds on the parameters of the model for this case. The collider bounds put a lower limit on the allowed DM masses.
Dimethylformamide is a novel nitrilase inducer in Rhodococcus rhodochrous
(Springer, 2018-09) Chhiba-Govindjee, V. P.; Brady, D.; Mathiba, K.; van der Westhuyzen, C. W.; Steenkamp, P.; Rashamuse, J. K.; Stoychev, S.
Nitrilases are of commercial interest in the selective synthesis of carboxylic acids from nitriles. Nitrilase induction was achieved here in three bacterial strains through the incorporation of a previously unrecognised and inexpensive nitrilase inducer, dimethylformamide (DMF), during cultivation of two Rhodococcus rhodochrous strains (ATCC BAA-870 and PPPPB BD1780), as well as a closely related organism (Pimelobacter simplex PPPPB BD-1781). Benzonitrile, a known nitrilase inducer, was ineffective in these strains. Biocatalytic product profiling, enzyme inhibition studies and protein sequencing were performed to distinguish the nitrilase activity from that of sequential nitrile hydratase-amidase activity. The expressed enzyme, a 40-kDa protein with high sequence similarity to nitrilase protein Uniprot Q-03217, hydrolyzed 3-cyanopyridine to produce nicotinic acid exclusively in strains BD-1780 and BD-1781. These strains were capable of synthesising both the vitamin nicotinic acid as well as β-amino acids, a compound class of pharmaceutical interest. The induced nitrilase demonstrated high enantioselectivity (>99%) in the hydrolysis of 3-amino-3-phenylpropanenitrile to the corresponding carboxylic acid.
Free field primaries in general dimensions: counting and construction with rings and modules
(Springer, 2018-08) de Mello Koch, Robert
We define lowest weight polynomials (LWPs), motivated by so(d, 2) representation theory, as elements of the polynomial ring over d × n variables obeying a system of first and second order partial differential equations. LWPs invariant under Sn correspond to primary fields in free scalar field theory in d dimensions, constructed from n fields. The LWPs are in one-to-one correspondence with a quotient of the polynomial ring in d × (n − 1) variables by an ideal generated by n quadratic polynomials. The implications of this description for the counting and construction of primary fields are described: an interesting binomial identity underlies one of the construction algorithms. The product on the ring of LWPs can be described as a commutative star product. The quadratic algebra of lowest weight polynomials has a dual quadratic algebra which is non-commutative. We discuss the possible physical implications of this dual algebra.
Kondo effect and enhanced magnetic properties in gadolinium functionalized carbon nanotube supramolecular complex
(Nature Research, 2018-05) Ncube, S.; Coleman, C.; Strydom, A.; Flahaut, E.; de Sousa, A.
We report on the enhancement of magnetic properties of multiwalled carbon nanotubes (MWNTs) functionalized with a gadolinium based supramolecular complex. By employing a newly developed synthesis technique, we find that the functionalization method of the nanocomposite enhances the strength of magnetic interaction, leading to a large effective moment of 15.79µB and nonsuperparamagnetic behavior, unlike what has been previously reported. Saturating resistance at low temperatures is ftted with the numerical renormalization group formula, verifying the Kondo effect for magnetic impurities on a metallic electron system. Magnetoresistance shows devices fabricated from aligned gadolinium functionalized MWNTs (Gd-Fctn-MWNTs) exhibit spin-valve switching behaviour of up to 8%. This study highlights the possibility of enhancing magnetic interactions in carbon systems through chemical modification, moreover, we demonstrate the rich physics that might be useful for developing spin based quantum computing elements based on one-dimensional (1D) channels.
Chemical analysis of low grade gold from mine tailings after size fractionation and acid digestion using reverse aqua regia
(Nature Research, 2025-03) Chimuka, Luke; Tshilongo, James; Mashale, Kedibone Nicholine; Sehata, James; Ntsasa, Napo Godwill
The growing interest in reprocessing mine tailings for gold recovery requires a suitable quantification method that is accurate, rapid, and not harsh to the environment. Acid digestion is often used to determination of gold; however, it often faces the challenge of incomplete digestion due to the presence of minerals such as quartz, and homogeneity is compromised due to small sample masses, which can result in low bias. This study investigated a shorter acid digestion method employing reverse aqua regia, both in the presence and absence of hydrofluoric acid. Before digestion, the sample was subjected to gold depot analysis, which showed that 78% was free-milling gold and that only 0.8% was associated with pyrite, increasing the chances of accurate quantifications. Furthermore, the size screening test showed that most of the gold could be recovered on the −38 μm screen. This proposed method provided good linearity (5–100 µg. L−1) and low detection limits (0.139–0.183 µg.kg−1). The concentrations obtained by the acid digestion was 0.258 g.t−1 with the recoveries ranging between 80% and 82%, which fit the criteria set. The method also worked well for the certified reference materials (CRM), AMIS 610 (accurate value=0.068 g.t−1) and AMIS 646 (accurate value=0.166 g.t−1), which are of a similar matrix and are also lower in grade compared to the sample. The method was also evaluated for uncertainty (±value) using the bottom-up approach, and the expanded uncertainty (k=2) was reported to be 0.258±0.092 g.t−1, which was comparable to that offered by the fire assay with the ICP‒OES finish, which was 0.28±0.10 g.t−1. This implies that the acid digestion method is suitable for quantifying gold from mine tailings without large uncertainties.
Topological rejection of noise by quantum skyrmions
(Nature Research, 2025-03) Ornelas, Pedro; Forbes, Andrew; de Mello Koch, Robert
An open challenge in the context of quantum information processing and communication is improving the robustness of quantum information to environmental contributions of noise, a severe hindrance in real-world scenarios. Here, we show that quantum skyrmions and their nonlocal topological observables remain resilient to noise even as typical entanglement witnesses and measures of the state decay. This allows us to introduce the notion of digitization of quantum information based on our discrete topological quantum observables, foregoing the need for robustness of entanglement. We compliment our experiments with a full theoretical treatment that unlocks the quantum mechanisms behind the topological behavior, explaining why the topology leads to robustness. Our approach holds exciting promise for intrinsic quantum information resilience through topology, highly applicable to real-world systems such as global quantum networks and noisy quantum computers.
A Technique to Solve a Parabolic Equation by Point Symmetries that Incorporate Initial Data
(Springer, 2025-03) Jamal, Sameerah; Maphanga, Rivoningo
In this paper, we show how transformation techniques coupled with a convolution integral can be used to solve a generalised option-pricing model, including the Black–Scholes model. Such equations are parabolic and the special convolutions are extremely involved as they arise from an initial value problem. New symmetries are derived to obtain solutions through an application of the invariant surface condition. The main outcome is that the point symmetries are effective in producing exact solutions that satisfy a given initial condition, such as those represented by a call-option.

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