Faculty of Science (Research Outputs)

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End date: 2019Has files: Yes

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    Evidence for igneous differentiation in Sudbury Igneous Complex and impact-driven evolution of terrestrial planet proto-crusts
    (Nature Research, 2019-01) Latypov, Rais; Chistyakova, Sofya; Grieve, Richard; Huhma, Hannu
    Bolide impact is a ubiquitous geological process in the Solar System, which produced craters and basins filled with impact melt sheets on the terrestrial planets. However, it remains controversial whether these sheets were able to undergo large-scale igneous differentiation, or not. Here, we report on the discovery of large discrete bodies of melanorites that occur throughout almost the entire stratigraphy of the 1.85-billion-year-old Sudbury Igneous Complex (SIC) – the best exposed impact melt sheet on Earth – and use them to reaffirm that conspicuous norite-gabbro-granophyre stratigraphy of the SIC is produced by fractional crystallization of an originally homogeneous impact melt of granodioritic composition. This implies that more ancient and compositionally primitive Hadean impact melt sheets on the Earth and other terrestrial planets also underwent large-volume igneous differentiation. The near-surface differentiation of these giant impact melt sheets may therefore have contributed to the evolution and lithological diversity of the proto-crust on terrestrial planets.
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    Temporal shifts in landscape connectivity for an ecosystem engineer, the roe deer, across a multiple-use landscape
    (Springer, 2018-04) Martin, Jodie; Vourc’h, Gwenae¨l; Bonnot, Nade`ge; Cargnelutti, Bruno; Chaval, Yannick; Lourte, Bruno; Goulard, Michel; Hoch, Thierry; Plantard, Olivier; Hewison, A. J. Mark; Morellet, Nicolas
    Context: Routine movements of large herbivores, often considered as ecosystem engineers, impact key ecological processes. Functional landscape connectivity for such species influences the spatial distribution of associated ecological services and disservices. Objectives: We studied how spatio-temporal variation in the risk-resource trade-off, generated by fluctuations in human activities and environmental conditions, influences the routine movements of roedeer across a heterogeneous landscape, generating shifts in functional connectivity at daily and seasonal time scales. Methods: We used GPS locations of 172 adult roedeer and step selection functions to infer landscape connectivity. In particular, we assessed the influence of six habitat features on fine scale movements across four biological seasons and three daily periods, based on variations in the risk-resource trade-off. Results: The influence of habitat features on roe deer movements was strongly dependent on proximity to refuge habitat, i.e. woodlands. Roe deer confined their movements to safe habitats during daytime and during the hunting season, when human activity is high.
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    Platinum-bearing chromite layers are caused by pressure reduction during magma ascent
    (Nature Research, 2018) Latypov, Rais; Costin, Gelu; Chistyakova, Sofya; Hunt, Emma J.; Mukherjee, Ria; Naldrett, Tony
    Platinum-bearing chromitites in mafic-ultramafic intrusions such as the Bushveld Complex are key repositories of strategically important metals for human society. Basaltic melts saturated in chromite alone are crucial to their generation, but the origin of such melts is controversial. One concept holds that they are produced by processes operating within the magma chamber, whereas another argues that melts entering the chamber were already saturated in chromite. Here we address the problem by examining the pressure-related changes in the topology of a Mg2SiO4–CaAl2Si2O8–SiO2–MgCr2O4 quaternary system and by thermodynamic modelling of crystallisation sequences of basaltic melts at 1–10 kbar pressures. We show that basaltic melts located adjacent to a so-called chromite topological trough in deep-seated reservoirs become saturated in chromite alone upon their ascent towards the Earth’s surface and subsequent cooling in shallow-level chambers. Large volumes of these chromite-only-saturated melts replenishing these chambers are responsible for monomineralic layers of massive chromitites with associated platinum-group elements.
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    Assessing runs of Homozygosity: a comparison of SNP Array and whole genome sequence low coverage data
    (BMC, 2018) Ceballos, Francisco C.; Hazelhurst, Scott; Ramsay, Michèle
    Background: Runs of Homozygosity (ROH) are genomic regions where identical haplotypes are inherited from each parent. Since their first detection due to technological advances in the late 1990s, ROHs have been shedding light on human population history and deciphering the genetic basis of monogenic and complex traits and diseases. ROH studies have predominantly exploited SNP array data, but are gradually moving to whole genome sequence (WGS) data as it becomes available. WGS data, covering more genetic variability, can add value to ROH studies, but require additional considerations during analysis. Results: Using SNP array and low coverage WGS data from 1885 individuals from 20 world populations, our aims were to compare ROH from the two datasets and to establish software conditions to get comparable results, thus providing guidelines for combining disparate datasets in joint ROH analyses. By allowing heterozygous SNPs per window, using the PLINK homozygosity function and non-parametric analysis, we were able to obtain non-significant differences in number ROH, mean ROH size and total sum of ROH between data sets using the different technologies for almost all populations. Conclusions: By allowing 3 heterozygous SNPs per ROH when dealing with WGS low coverage data, it is possible to establish meaningful comparisons between data using SNP array and WGS low coverage technologies.
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    Entanglement beating in free space through spin–orbit coupling
    (Springer Nature, 2018) Rosales-Guzmán, Carmelo; Denz, Cornelia; Otte, Eileen; Ndagano, Bienvenu; Forbes, Andrew
    It is well known that the entanglement of a quantum state is invariant under local unitary transformations. This rule dictates, for example, that the entanglement of internal degrees of freedom of a photon remains invariant during free-space propagation. Here, we outline a scenario in which this paradigm does not hold. Using local Bell states engineered from classical vector vortex beams with non-separable degrees of freedom, the so-called classically entangled states, we demonstrate that the entanglement evolves during propagation, oscillating between maximally entangled (purely vector) and product states (purely scalar). We outline the spin–orbit interaction behind these novel propagation dynamics and confirm the results experimentally, demonstrating spin–orbit coupling in paraxial beams. This demonstration highlights a hitherto unnoticed property of classical entanglement and simultaneously offers a device for the on-demand delivery of vector states to targets, for example, for dynamic laser materials processing, switchable resolution within stimulated emission depletion (STED) systems, and a tractor beam for entanglement.
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    Insights into the genetics of blood pressure in black South African individuals: the Birth to Twenty cohort
    (BMC, 2018) Hendry, Liesl M.; Sahibdeen, Venesa; Choudhury, Ananyo; Norris, Shane A.; Ramsay, Michèle; Lombard, Zané
    Background: Cardiovascular diseases (CVDs) are the leading cause of non-communicable disease deaths globally, with hypertension being a major risk factor contributing to CVDs. Blood pressure is a heritable trait, with relatively few genetic studies having been performed in Africans. This study aimed to identify genetic variants associated with variance in systolic (SBP) and diastolic (DBP) blood pressure in black South Africans. Methods: Genotyping was performed using the Metabochip in a subset of participants (mixed sex; median age 17.9) and their adult female caregivers (median age 41.0) from the Birth to Twenty cohort (n = 1947). Data were analysed as a merged dataset (all participants and caregivers together) in GEMMA (v0.94.1) using univariate linear mixed models, incorporating a centered relatedness matrix to account for the relatedness between individuals and with adjustments for age, sex, BMI and principal components of the genotype information. Results: Association analysis identified regions of interest in the NOS1AP (DBP: rs112468105 - p = 7.18 × 10−5 and SBP: rs4657181 - p = 4.04 × 10−5), MYRF (SBP: rs11230796 - p = 2.16 × 10−7, rs400075 - p = 2.88 × 10−7) and POC1B (SBP: rs770373 - p = 7.05 × 10−5, rs770374 - p = 9.05 × 10−5) genes and some intergenic regions (DACH1|LOC440145 (DBP: rs17240498 - p = 4.91 × 10−6 and SBP: rs17240498 - p = 2.10 × 10−5) and INTS10|LPL (SBP: rs55830938 - p = 1.30 × 10−5, rs73599609 - p = 5.78 × 10−5, rs73667448 - p = 6.86×10−5)). Conclusions: The study provided further insight into the contribution of genetic variants to blood pressure in black South Africans. Future functional and replication studies in larger samples are required to confirm the role of the identified loci in blood pressure regulation and whether or not these variants are African-specific.
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    Towards multiscale and multisource remote sensing mineral exploration using rpas: A case study in the lofdal carbonatite-hosted ree deposit, Namibia
    (MDPI, Basel, Switzerland, 2019) Booysen, René; Nex, Paul A.M.; Zimmermann, Robert; Lorenz, Sandra; Gloaguen, Richard; Andreani, Louis; Möckel, Robert
    Traditional exploration techniques usually rely on extensive field work supported by geophysical ground surveying. However, this approach can be limited by several factors such as field accessibility, financial cost, area size, climate, and public disapproval. We recommend the use of multiscale hyperspectral remote sensing to mitigate the disadvantages of traditional exploration techniques. The proposed workflow analyzes a possible target at different levels of spatial detail. This method is particularly beneficial in inaccessible and remote areas with little infrastructure, because it allows for a systematic, dense and generally noninvasive surveying. After a satellite regional reconnaissance, a target is characterized in more detail by plane-based hyperspectral mapping. Subsequently, Remotely Piloted Aircraft System (RPAS)-mounted hyperspectral sensors are deployed on selected regions of interest to provide a higher level of spatial detail. All hyperspectral data are corrected for radiometric and geometric distortions. End-member modeling and classification techniques are used for rapid and accurate lithological mapping. Validation is performed via field spectroscopy and portable XRF as well as laboratory geochemical and spectral analyses. The resulting spectral data products quickly provide relevant information on outcropping lithologies for the field teams. We show that the multiscale approach allows defining the promising areas that are further refined using RPAS-based hyperspectral imaging. We further argue that the addition of RPAS-based hyperspectral data can improve the detail of field mapping in mineral exploration, by bridging the resolution gap between airplane- and ground-based data. RPAS-based measurements can supplement and direct geological observation rapidly in the field and therefore allow better integration with in situ ground investigations. We demonstrate the efficiency of the proposed approach at the Lofdal Carbonatite Complex in Namibia, which has been previously subjected to rare earth elements exploration. The deposit is located in a remote environment and characterized by difficult terrain which limits ground surveys.
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    Survival analysis of bank loans in the presence of long-term survivors
    (South African Statistical Association, 2017-04) Marimo, M; Chimedza, C
    In this paper we model competing risks, default and early settlement events, in the presence of long term survivors and compare survival and logistic methodologies. Cause specific Cox regression models were fitted and adjustments were made to accommodate a proportion of long term survivors. Methodologies were compared using ROC curves and area under the curves. The results show that survival methods perform better than logistic regression methods when modelling lifetime data in the presence of competing risks and in the presence of long term survivors.
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    Wishart exponential families on cones related to tridiagonal matrices
    (Springer Tokyo, 2019-04-01) Graczyk, P; Ishi, H; Mamane, S
    Let G be the graph corresponding to the graphical model of nearest neighbor interaction in a Gaussian character. We study Natural Exponential Families (NEF) of Wishart distributions on convex cones Q G and P G , where P G is the cone of tridiagonal positive definite real symmetric matrices, and Q G is the dual cone of P G . The Wishart NEF that we construct include Wishart distributions considered earlier for models based on decomposable(chordal) graphs. Our approach is, however, different and allows us to study the basic objects of Wishart NEF on the cones Q G and P G . We determine Riesz measures generating Wishart exponential families on Q G and P G , and we give the quadratic construction of these Riesz measures and exponential families. The mean, inverse-mean, covariance and variance functions, as well as moments of higher order, are studied and their explicit formulas are given. © 2018, The Institute of Statistical Mathematics, Tokyo.
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    Thermal analysis of natural convection and radiation heat transfer in moving porous fins
    (Global Digital Central, 2019) Ndlovu, P.L.; Moitsheki, R.J.
    In this article, the Differential Transform Method (DTM) is used to perform thermal analysis of natural convective and radiative heat transfer in moving porous fins of rectangular and exponential profiles. This study is performed using Darcy’s model to formulate the governing heat transfer equations. The effects of porosity parameter, irregular profile and other thermo-physical parameters, such as Peclet number and the radiation parameter are also analyzed. The results show that the fin rapidly dissipates heat to the surrounding temperature with an increase in the values of the porosity parameter and the dimensionless time parameter. The results also show that the heat transfer rate in an exponential profile with negative power factor is much higher than the rectangular profile.