3. Electronic Theses and Dissertations (ETDs) - All submissions
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Item Molecular variability of cassava Bemisia tabaci and its effect on the epidemiology of cassava mosaic geminiviruses in Uganda(2009-05-29T10:44:10Z) Sseruwagi, PeterBemisia tabaci (Genn.) is the vector of cassava mosaic geminiviruses (CMGs), which are the main production constraint to cassava, both in Uganda and elsewhere in Africa. A severe form of cassava mosaic disease (CMD) was responsible for the devastation of cassava in Uganda beginning in the late 1980s. In subsequent years the severe CMD epidemic spread throughout Uganda, and to neighbouring countries, causing devastating effects to cassava production, and its geographical range continues to expand with the pandemic. To further understand the virus-vector dynamics involved in the spread of CMD in the post epidemic zone in Uganda, we investigated the current distribution of B. tabaci genotypes in selected cassava-growing regions. Additionally, the relationship between the vector genotypes and distribution of CMGs in the post-epidemic zone was examined also. CMD-affected cassava leaves were collected from 3 to 5 month-old cassava plants, and B. tabaci adults and fourth instar nymphs were collected from cassava and twenty-two other plant species occurring adjacent to the sampled cassava fields. The mitochondrial cytochrome oxidase I (mtCOI) sequence was used to establish the genotype of B. tabaci adults and nymphs associated with the sampled plant species. African cassava mosaic virus (ACMV) and East African cassava mosaic virus-Uganda 2 (EACMV-UG2) were confirmed to be present in the post-epidemic zone in Uganda, as reported previously. As expected, EACMV-UG2 predominated. However, unlike previous observations in which EACMV-UG2 was consistently associated with the severe disease phenotype, in this study EACMV-UG2 occurred almost equally in the severely and mildly diseased plants. Phylogenetic analyses of Ugandan B. tabaci genotypes (mtCOI) revealed that their closest relatives were other Old World genotypes, as might be expected. Two previously reported B. tabaci genotype clusters, Uganda 1 (Ug1) and Uganda 2 (Ug2), at ~8% nt divergence, were confirmed to occur on cassava in the post-epidemic zone. However, Ug1 occurred more frequently (83%) than Ug2 (17%), and no definite association was established of a particular vector genotype with cassava plants exhibiting the severe disease phenotype, in contrast to the B. tabaci genotype distribution and association with the CMGs reported there at the height of the spread of the severe CMD epidemic. Based on the presence of B. tabaci fourth instar nymphs, the Ug1 genotypes colonized five additional non-cassava plant species: Manihot glaziovii, Jatropha gossypifolia, Euphorbia heterophylla, Aspilia africana and Abelmoschus esculentus, suggesting that in Uganda the Ug1 genotypes are not restricted to cassava. However, no Ug2 genotypes were detected on the non-cassava plant species sampled. This study revealed also the presence in Uganda of five distinct previously unrecorded B. tabaci genotype clusters, Uganda 3 (Ug3), Uganda 4 (Ug4), Uganda 5 (Ug5), Uganda 6 (Ug6) and Uganda 7 (Ug7), and a sweetpotato colonizing genotype cluster, designated Uganda 8 (Ug8), among the collective Ugandan B. tabaci populations. Ug3 was the only exemplar representing one cluster, which was unlike any previously described genotype in Uganda or elsewhere, and diverged at 8%, 10% and 17% from Ug1, Ug2 and Ug8, respectively. The Ug3 genotypes colonized a single species, Ocimum gratissimum. Ug4, Ug5, Ug6 and Ug7 formed four closely related sub-clusters (93-97% nt identity), and diverged from one another by 1-7%, and by 15-18% from Ug1, Ug2, Ug3 and Ug8, respectively. The Ug4 genotypes had as their closest relatives (at 97-99% nt identity) previously reported B. tabaci from okra in the Ivory Coast, whereas, the Ug5 and Ug6 genotypes shared 95-99% and 99% nt identity, respectively, with their closest relatives from the Mediterranean-North Africa- Middle East (MED-NAFR-ME) region, which also includes the well studied B and Q biotypes. The Ug7 genotypes were closely related (at 98-99% nt identity) to B. tabaci from Reunion Island in the Indian Ocean. The Ug4, Ug5, Ug6 and Ug7 genotypes were identified on 54%, 8%, 8%, and 31% of the sampled plants species, respectively. Ug4 were most polyphagous, followed by Ug7 and Ug6. However, none of the new five genotypes (Ug3-Ug7) was found associated with, or colonizing, xx cassava or sweetpotato plants in this study. Squash plants colonized by the Ug6 and Ug7 genotypes, both members of the B biotype/B-like cluster, developed the silvering phenotype, while those colonized by the Ug4 genotypes (most closely related to a non-B like genotype from okra in the Ivory Coast) did not. In addition to colonizing sweetpotato, the Ug8 genotypes also colonized Lycopersicon esculentum and L nepetifolia.Item Isolation of pure cassava linamarin as an anti cancer agent(2008-04-03T10:03:36Z) Idibie, Christopher AvwoghokogheneABSTRACT Cassava is a known source of linamarin, but difficulties associated with its isolation have prevented it from being exploited as a source. A batch adsorption process using activated carbon at the appropriate contact time proved successful in its isolation with ultrafiltration playing a pivotal role in the purification process. Result revealed that optimum purification was obtained with increasing amount of crude cassava extract (CCE) purified. 60g of CCE took 32 mins, 80 g, 34 mins while 100 g took 36 mins of contact time, where 1.7 g, 2.0 g and 2.5 g of purified product were obtained, respectively. The purification process in batch mode was also carried out at different temperatures ranging from 25 to 65oC. Results showed that purification increases with increase in temperature. In a bid to ascertain the moles of linamarin adsorbed per pore volume of activated carbon used, the composite isotherm was found to represent the measured adsorption data quite well. The adsorption of linamarin was used to study the goodness of fit criteria (R2) for the entire process. Results showed that R2 value was best with decreasing amount of CCE purified (R2=1 for 60 g) at the temperature of 45oC. Compound elucidation of purified product by Picrate paper test, IR and 1HNMR confirmed the structure of linamarin. Cytotoxic effects of linamarin on MCF-7, HT-29, and HL-60 cells were determined using the 3 - (4, 5 – dimethylthiazol-2-yl) – 2, 5 – diphenyltetrazolium bromide (MTT) assay. Cytotoxic effects were significantly increased in the presence of linamarase, which catalysed the hydrolysis of linamarin to hydrogen cyanide. A 10–fold decrease in the IC50 values obtained for linamarin or crude extract in the presence of linamarase was determined for HL-60 cells. This study thus describes a method for the isolation and purification of linamarin from cassava, as well as the potential of this compound as an anticancer agent.Item Screening of selected Cassava Cultivars for SACMV Resistance(2006-11-01T08:18:17Z) Osman, Rozida HaroonCassava is one of the most important staple crops in the world and is consumed by over 700 million people around the globe and is a profitable product commercially due to the high starch content of its tubers. One of the future aims is to produce cassava that is high yielding, resistant to cassava mosaic geminiviruses (CMGs) and high in starch content. To be able to achieve commercially attractive cassava varieties, research need to be carried out to investigate the virus resistance status of different cassava cultivars, which can later be used in the future breeding programme. In South Africa, cassava is used for commercial starch manufacturing purposes, as a cash crop and a food source by small-scale farmers. Cassava Mosaic Disease (CMD) is having a negative impact on yield of the crop globally and therefore dropping profitability of cassava on a commercial scale. The aims of this research were to propagate thirteen cassava cultivars and then to test them for virus susceptibility or resistance. Eleven cassava cultivars received from the International Institute of Tropical Agriculture (IITA) were tested for resistance or susceptibility against South African cassava mosaic virus (SACMV). Two local, commercial cultivars T200 and T400, were tested for East African cassava mosaic virus (EACMV) and African cassava mosaic virus (ACMV) resistance. Cassava cultivars were successfully propagated in vitro and thereafter transferred into soil and acclimatized to adapt to environmental conditions. When the plantlets were three weeks old, the plantlets were infected with cassava mosaic viruses. Plants were infected with SACMV via Agrobacterium-mediated transfer and infectious EACMV and ACMV monomers were used to biolistically bombard the plantlets. Resistance/susceptibility results of seven of the thirteen cultivars were obtained with SACMV, these cultivars being T200 (susceptible), T400 (susceptible), TME3 (highly resistant), I30572 (susceptible), I420251 (highly susceptible), I60506 (susceptible) and TMS60444 (susceptible). Due to destruction by fungal gnats eating the roots of the plants, acclimatization of the remaining six cultivars was not possible. Also, due to the nature of the biolistic equipment, infection of the cultivars with EACMV and ACMV was not achieved as the plantlets were not robust enough to survive the pressure.